RNA id: XR_005037003.1


Basic Information

Item Value
RNA id XR_005037003.1
length 2289
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110488740
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15325555 ~ 15394233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTTAAGATGTTTGCTTGTAGTCGAATGACTATCCGCAATCATGGCAGGGATTCAGGAAAAAGATTTGTGCACTGTCTGGGTAGGAAATAAGTCAAGAGGACGTCTGCTATTTGTAATGCATGGATATTTTCCTCAGCGCTGAATGAAACCAAGAGGCACGCAAATATTTTCTGCTGCAGAGCTTTACTTTTTCTTGGGCATGGATTTCGAATTGTCAAATTACGTTTAATTTATTATTTTAGCCAGAGCAAAGTGCGTGGCTGCTAGCAAACCGCTAACTTAGCTACTAGTTGGATAGACGCTATCCTAACTAAATGAGCTactctttttttatttaattttttaatgTTTACCAATATCATTAACTAGTTAGCTTTTTTACCAGTTTAGTCAGTCTTAGAAACTTGTTTGTGTCGATGACTCTCGACAGCCTTAAACATTCTCCTATCCTTTCAACTTTGTTTAAAATGGCAGACGACATAGAATTGATAGGAGCCTGTGAATTAATAAAAGatCGATTATATTTTGCTACCCTAAGAAGCAAGCCAAAAAGCACTGCAAACACTCACTACTTCTGCACAGATGACGAATTTATCTATGAAAAgaggagactgcgtggcaggctgaccacctgttatgagtgcagcaaggagccatgCTTCTATGCGGATTTTGGACCACTCAACCTAGCCATGCTATACAGATACAGctgtaaactcaacaaaaagcTGAAGACGATCTGTAGATCTGTCATATGTGGGTGTTGGTCAGTGTTGAAGTCGTTCACACTGACCAGAAAGCGAATCGTGCACTACACCAGCTTTGACCAGCGGAAAAGGGCTAATGCTGCTGTTTTAATCGCTGCCTATGCTGTCATCTACCTAAAGAAGACCCCAGAGGATGCCTACAGGGCTCTGATCTCAGGCTCCAATGCTTCATATCTTCCCTTCAGGGATGCCTCGTTTGGAAATTGCACATACAACCTGACAATTCTCGACTGCCTACAAGGAATCCGGAAAGCCCTGCAACATGGATTCTTTGACTTTGAGACATTTGACGTGGACGAATATGAGCACTACGAGCGAGTGGAAAACGGTGACTTCAACTGGATCGTGCCGGGGAAGTTTCTGGCCTTCAGTGGACCCCATCCCAAAAGTAAAATAGAGAATGGCTACCCTCTCCATGCCCCAGAGGCGTACTTCCCCTACTTCCGGAAACACAACATTACCACGGTGGTGCGGCTCAACAAGAAGATCTATGACGCCAAGCGCTTCACGGATGCCGGCTTCGACCACTACGACTTGTTCTTCGTGGATGGCAGCACACCCAACGACGTCATCACCCGCCGATTCCTGCACATCTGTGAGAGCACCGATGGAGCCGTGGCCGTTCACTGCAaggCTGGCCTTGGTCGTACTGGCACCCTGATAGGCTGTTACCTAATGAAGCACTACCACTTCACGGCAGCAGAGACCATCGCCTGGATCAGGGTCTGCCGGCCGGGCTCTATTATCGGGCCTCAGCAGCTCTTCTTGGAGGAgAGGCAGGCAGCCATGTGGATGCAGGGGGACATGCAGCGTTCGCAGCCGAGGGGCGTGTCTCACCTCATCTCCAGCATGGACGACCTCACCCTCAGACCAACCCACACCTCTATTACCACCAGCAGCCCCGCTGGCATCCTCAGGTCCCACAGTACCGACCGCCTTCAAGAGAACGACTACATTGGGGAGAATGGCCTATGCATGACCCAAGGAGATAAATTGCGTGCCTTAAAGGGCCGGCGCCAGCCCAGGTCAGCCACAACAGGAGCTCTAAGACTTGAAGACATGAAAATGCACACCAGGTCACCGTCCCAACCTTTTAGtaGGATGAACCTTGGAGTGGGCACTCAGGGTACCATCTCCCCACTCAAGTCCTCCAAAGTCCCATCATCCTCTGCTTCCGCCACGGCCAAGAGAATCAGCCGCAGCTCCTCCTCCTCGGCATCCAACCTCAAGAGTCCCCTGGTTGTGTTTCTGCCTGTCTGTGACTACCCCATGTCCTGAGTGCAAGTGGCAGGTGGAAGGAtatgcagggcaggacagggaACACGTGTGCAGTGTGTCTCAGTGACCAGACCGATTCACAGAAAGGGTTGATGCTCTGCAGGCTCTCCTTCATTAACTGCAGGCTAGCCAGCTCCTTAGGCAACCTGTACGCAGCTGACAGCAGCGAGGGCAATAGGAAGCTGCCGTACACGCCCTCTTCAtcacactcttcctcctctcctccctccatcgtCACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16772 lncRNA downstream 109700 15221192 ~ 15221413 (-) True G14189
TU16771 lncRNA downstream 110034 15220765 ~ 15221079 (-) True G14188
TU16768 lncRNA downstream 115055 15215785 ~ 15216058 (-) True G14185
TU16766 lncRNA downstream 117349 15213296 ~ 15213764 (-) True G14183
TU16741 lncRNA downstream 146392 15184421 ~ 15184721 (-) True G14162
TU16849 lncRNA upstream 10469 15404702 ~ 15407419 (-) True G14264
TU16854 lncRNA upstream 23464 15417697 ~ 15418086 (-) True G14268
TU16880 lncRNA upstream 51564 15445797 ~ 15498641 (-) True G14289
TU16958 lncRNA upstream 132886 15527119 ~ 15527395 (-) True G14360
TU16960 lncRNA upstream 134744 15528977 ~ 15529244 (-) True G14362
XM_021561000.2 mRNA downstream 14716 15309943 ~ 15316397 (-) True LOC110488652
XM_021560886.2 mRNA downstream 23938 15294592 ~ 15307175 (-) True vcam1b
XM_036949549.1 mRNA downstream 58574 15243620 ~ 15272539 (-) True LOC110488514
XM_021560770.2 mRNA downstream 58583 15243620 ~ 15272530 (-) False LOC110488514
XM_036949599.1 mRNA downstream 59123 15243620 ~ 15271990 (-) False LOC110488514
XM_021561723.2 mRNA upstream 6276 15400509 ~ 15416433 (-) False LOC110489111
XM_021561803.2 mRNA upstream 6276 15400509 ~ 15416750 (-) True LOC110489111
XM_021562135.2 mRNA upstream 41966 15436199 ~ 15447286 (-) True trmt13
XM_021562298.2 mRNA upstream 80755 15474988 ~ 15491870 (-) False LOC110489545
XM_036950595.1 mRNA upstream 80755 15474988 ~ 15491872 (-) True LOC110489545
TU16702 other downstream 147571 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 149050 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 157083 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 371845 14956025 ~ 14959268 (-) True LOC110487385
TU15628 other downstream 962780 14366290 ~ 14368333 (-) False G13196
TU17863 other upstream 794771 16189004 ~ 16216296 (-) True LOC110531395
TU18158 other upstream 1136814 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 1466416 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 1737187 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 1737488 17131721 ~ 17136357 (-) False G16100

Expression Profile