RNA id: XM_021561723.2


Basic Information

Item Value
RNA id XM_021561723.2
length 2412
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110489111
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15400509 ~ 15416750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAATTGATTGCTTGCTGATCACAATTGCGCATGTGCTAACAGTCAACACGATCAAGAGTAGCAGCCTTAATGCTGAGCAACATTTCATGGAAAAATGTGAATAACACGTGAACATCGCAGTTCAAATATAACCCGTTTTTTCGTATCGTTGTGGgattttccttttttctctcccAAGTAATAAGAAATTGCTTTCATTGATAACTACCGCACTGCGCAGTGACGGTTGGGGGAAGTTCACAATTGGAGTAGCTACCCCAGACGCCGGCGGAGTGTCTGTTACATCAAACGCTGTAAAAAGCTACTTGAGAGCAGAGCATCCGCATTTGCGTGTTTTCATATCTTTAGGGACAGACATCATACATTTCTTATAGTGGAGAAGTCATTGAAAAACATAAATATTTTTCTTCTTGTTTCAAAAATGGCCGCAGCAATGGTGGAAATGGACGGAAGTATAATGGAGGGTGGCGGGCAAATTTTGAGAGTATCTGCCGCACTGAGTTGCATCAACGGCGCTTCCATCAGAATAAACAAAATTCGCGCAGGTAGAGGTACACCAGGATTAAGACCACAGCATCTGTCGGGGTTGGAGTTGGTGAGGGACATTTGTTGTGGAAATCTTGAGGGAGGCTCTGTGGGATCTACAGAAGTCACACTCACCCCTGGGAAAATAAAAGCTGGGAATCACACCGCAGACCCACAAACGGCAGGGAGTGTGGGGCTGCTGCTGCAGGTCTCTCTACCCTGTGCCCTATACGCTGATGGCCCCTCTGAGCTCTGTCTGAAGGGGGGCACCAACGCGGATATGGCCCCGCAGATTGACTACACCATCAAGgtattCAAGCCCATTGTGGAGAAGTTTGGTGTACATTTCAACTGTGACTTGAGAATGAGGGGCTACTACCCCAAAGGCGGAGGTGAGGTGGTGGCTAAGGTTAGCCCAGTGAGCGAGCTGAGCCCTGTCAACATGACCGAACGAGGAACCATCTCCAAGATCTATGGAAGGTCCTTTGTTGCTGGGGTTTTACCCTATAAGCTTGCCAAGGACATGGCCACGACTGCAACAAGAGTTATCAGGCGAGAGATAAAGGACCTTTACATCAACATTCAAACACTGCAGGAGAAGGACATGGCCTGTGGAAGCGGCAACGGCATCATAATCATCGCAGAGTCTTCCACAGGCTGTATATTTGCAGGGTCAGCTCTTGGCAAGAAAGGTGTGTACCCAGACAAAGTGGGCTTTGAGGCTGCAGAGATGCTGCTCAGGAATATAAGGCACAACGGCTGTGTGGACGAGTTTCTGCAGGACCAGCTCATCCTTTTCATGGCCTTAGCAAACGGCATCTCCAGAATCCGCACTGGCCCAGTCACCCTACACACAAAGACTGCAATCCATGTGGCAGAACAGCTCACCCAGGCCAAGTTTACAGTGACCAAGGCAGATGACGAGAATGCCAGCAATGACACCTACATCATCGAGTGCCAAGGAGTGGGTGTCACCAACCCCCATTTCTAGCCACACCCATGTGTCTAACCGCCCCTTTTATGTTGTCTCCACCTGCAGCCGTGGATAGAAGAGGCACTGGAGACACTACTGTGATGTCACCTAACGGTCGGATGCTGCTTCTATTTATATTACAATTTATCATGGCCCTCGTGGCACGATATTCAAGCAAATGAATTATTGGTTTACAAACGCACAGCCACATGACAGTTGGTCATCGTTGTCCTTTCCCCCTATTGCATTAACTGTCATTACCCTCGTAGCTTGTATAACTCAGGGTATTAATGCCTTACACTGTTATAATAAAAACATTAGATTTCTGTGTAGAAGGGGTGTACGTTTCAGCAGTCTCAGTGCATACAGGCTTTTATGGCAAAAAAAAACCCATTGTTCATGTTCTCTGTCCCTAGTTGATCATTCTAGTTCCATTTTGCTTCATACGGGgaggatttctgtattttgaaagatatGTCTTGAAAAAGTGATTGCTGAAAAGCAAAACATTTAGGGGTTATgacaacaatggactaatgaaacaaataccaatatattgtttttgggtggagttttcctttatgTCAATTGTTTCACTTATTAGAATTTTTTTTGGTGCATTGTTTGTCACTCAGGTAATGCAGATTAGACTGCAGAGTTGTGTTGACTACTGTATTAGTCAGATAATGTTTAAAAGACAATGTGGAGATTTGTTTTCCACATTGATTTGagaaaatatgaataaaatacCTTATTTTTGCCTTCTCTGAACAGAAGATGATCTTGAGTAAAGGATTTGTGACATATCATGGATTGATTCAGATATCTTCTCACCCCCAGAAATGCGTAGCTGGATGTCTGTCATCACTCATAACCCCTTCATTGCATTAAAAAACTAAATCCATGTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16757 lncRNA downstream 68939 15325555 ~ 15331570 (-) False LOC110488740
TU16772 lncRNA downstream 179096 15221192 ~ 15221413 (-) True G14189
TU16771 lncRNA downstream 179430 15220765 ~ 15221079 (-) True G14188
TU16768 lncRNA downstream 184451 15215785 ~ 15216058 (-) True G14185
TU16766 lncRNA downstream 186745 15213296 ~ 15213764 (-) True G14183
TU16854 lncRNA upstream 1264 15417697 ~ 15418086 (-) True G14268
TU16880 lncRNA upstream 29364 15445797 ~ 15498641 (-) True G14289
TU16958 lncRNA upstream 110686 15527119 ~ 15527395 (-) True G14360
TU16960 lncRNA upstream 112544 15528977 ~ 15529244 (-) True G14362
TU17128 lncRNA upstream 139280 15555713 ~ 15555960 (-) True G14515
XM_021561531.2 mRNA downstream 6276 15325555 ~ 15394233 (-) False LOC110488740
XR_005037003.1 mRNA downstream 6276 15331113 ~ 15394233 (-) False LOC110488740
XM_036950035.1 mRNA downstream 6276 15332955 ~ 15394233 (-) False LOC110488740
XM_021561116.2 mRNA downstream 6277 15325555 ~ 15394232 (-) False LOC110488740
XM_021561205.2 mRNA downstream 6277 15325555 ~ 15394232 (-) False LOC110488740
XM_021562135.2 mRNA upstream 19766 15436199 ~ 15447286 (-) True trmt13
XM_021562298.2 mRNA upstream 58555 15474988 ~ 15491870 (-) False LOC110489545
XM_036950595.1 mRNA upstream 58555 15474988 ~ 15491872 (-) True LOC110489545
XM_021562527.2 mRNA upstream 114979 15531412 ~ 15551453 (-) False LOC110489707
XM_021562625.2 mRNA upstream 114979 15531412 ~ 15551453 (-) False LOC110489707
TU16758 other downstream 59628 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 216967 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 218446 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 226479 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 441241 14956025 ~ 14959268 (-) True LOC110487385
TU17863 other upstream 772571 16189004 ~ 16216296 (-) True LOC110531395
TU18158 other upstream 1114614 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 1444216 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 1714987 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 1715288 17131721 ~ 17136357 (-) False G16100

Expression Profile