RNA id: TCONS_00026015


Basic Information

Item Value
RNA id TCONS_00026015
length 3976
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_013101
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49248389 ~ 49267856 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCGTGAGCGGATCCGTGTGCGTGACCCGGAAGAAATATCAGTGCGACGCTCTCTGATCCGCCCGAGTTTTCCTGCCGCTGCTAATTTTAGTTTCTCTACACCGGCAGCTTGTCGGTTACAAGTCTAAATGTGtggataaatatttatatatgtgtctCGTAACTATTTAACAACGTATACCATTGAGGGGAGAGATGATGGAGTACCCGAATCAGAGTGGGTTCAGACAGCGTAAGTTACTGCCGCAGGTCAGGATGCGAGGGTCCGCGATGGAGCCCAGTGACCCCACACAGTTATTTGATGACACCAGTTCCGGAGTGAACAAACATGAGCCCGGCAGGGTCGGAAAAAGCCCCGATGTGTTTTCAGGACAGAACCTGCTCTCGGACCCCATGTCAAACCTCGCCATGGCCTACGGCAGCAGTCTGGCATCCCACGGCAAAGAGATGATGGATAAGAACCTGGACCGTTTCATCCCCATCTCTAAGCTGAAGTACTACTTTGCAGTAGACACTGTATATGTTGGAAAGAAACTCGGATTGCTGGTTTTTCCCTACATGCATGATAACTGGGAGGTGAACTATCAGCAGGACACACCAGTCGCTCCACGCTTCGATATCAACGCCCCTGACCTCTATATTCCAGTGATGGGATTCATTACATATGTCCTGGTTGCAGGCCTGGCTCTGGGCACACAGAACCGGTTTTCTCCAGAAATTCTGGGCATTCAGGCCAGCTCAGCATTGGTGTGGCTCATTATTGAGGTTTTAGCTGTCCTTCTCAGTCTTTACCTGGTAACGGTTAACACCGACCTCACCACCATCGACCTGGTGGCCTTTTCCGGATACAAATATGTCGGgATGATTGTGGGAGTGGTTGCAGGACTTCTGTTTGGACGGATGGGATATTACCTCGCTCTGCTGTGGTTCTGCGCCTCCATTTTTGTCTTCACGATTCGTACGCTGCGGTTAAAGATCCTCTCTGAAGCGGCGGCAGAGGGACGCTTAGTGAGAGGAACCAAAAACCAGCTGCGGATGTACCTGACCATGGCCATCGCTGCAGCTCAGCCTGTCTTCATGTACTGGCTGACCTTTCACCTGGTCAGGTAGAGGAGTCAAGGTCATGAACAAGCAACTCCTCATCAGCACACACATGCACCCACgcacacattcagacacacacatacacagagaacAAACCAACGGACACGCGCTGAGAGCACAATGTCTCTATCTGAACTCGACTCGCCCTGCCgtctttttgtatgttttgggtTTGTACATTTCTGTTTTGTATGATGTACAGTGTAATTGTTgatttgttttgtatgtttatgCGACGGCGTTGTTCAGATGCTGGGACTGTGCCAGGCCATGGATGGGAATGTTTTTGGTGACTCAAACCAAATGAAAGCGCCTCTGTgtgatgatttatttttaatccatATTAAAGCGCGCTGTGTTTGTTGCCAGACTAACAGATGCATAGAAGAATAGAGCTTAAAGTGGAAAGTTCACCCctaaatgtgaaaatgtactctctatttactctccttcaaaCTCTTATGAGctctttttattctgttgaatagaaaatactttgaagaatgctgaaaaactcTAACCATTGGCTtacatgaaaaacaaatactattgaagtcaatggttacaggtttttagctttcttcaaactaacttcttttatgtttaacaagTAAATAATGGGTAGACAATGACAATTTTTACTCTTtctcaaacctttataagttcttttattctgttgatcacaaaaaaagatactttgaagaatgctgaaaacctgtaaccattgatttccatagtaaaaacaaatactattgaagtcaatggttacaggtttctacttgtttttttttttttacatttttactctcAAACCTTTATAAATCTCTTTCTTCCATTGaaaacacaagaagatattttgaagaatgctaaaaacctgtaaccattgacttccatagtaaaaacaaatactattaaagtcaatggttacaggtttctacttgtttttttttgtttgtttttgtttttttacatttttactctcACACCTTTATGAATCTTTCTTCCATTGAAAACacaagaagatactttgaagaatgctgaaaacctgtaaccattgatttccatagtaaaaacaaatactgttgaagtcaatggttacaggtttctacttgttttttttgttttttttttacatttttactctcAAACCTTTATAAATCTCTTTCTTCCAttgaacacacaagaagatattttgaagaatgctgaaaacatgtaaccattgacttgcatagtaaaaaacaatactatggaagtcaatggttacaagtttttgccattcttcaaactatcttcttttgtgttaagcataataaaagacacaaataaagatttaaaacaagtgaaggacaagtaaacaatgacagaatttgtaCTCTCcctcaaacctttataagttccTTTATTTTTGTTGAACAAAGGAGAagatttgaagaatgctgaaagcctgtaaccattgacttccataaaaattaatactattaaagttaatggttacaggttttcagtattcttcaaactatcttataaaatattttgaaaaatgctgaaaacctgtaaccattgacttccctaGTAAAAACATATTCAATGGAATTCTATGGTTACAGATTTCTgtcattcttcaaactatcttcttttgtgtttagcataAGAAAGGAcactcatgaaggtttgaaacaaggACGAGTAAACAATGTCAGAGATTTCACTGTCCCTCAAACCTGAAAACCGGTAGCCGTTGACTTACACAGTTAAAAActaatacaattgaagtcaatggttacaggtttccagcattcttcaaactatcttcttttgtgtttagcattagaaaagacactcataaagatttgaaatTAGGAtgagtaaaaaaagaaagtaatttactctccctcaaaccTTAATAATTTTCATGCTTTTCttgaacacacaagaagatattttgaagaatgctgaaaacctgtaaccattgacttccatagtaaaaacaaatacgATTGAAGTGattggttactggtttccagcattcttcaaactatcttttaaaaatattttgaggaatgctgaaaagctgtaacatttttgtaacattctTCAACTTTCAAAGTGTGTTTAGCATAAGAAAAGACACTCATAAATAATGTCTGAAACACGTCAAGTCAACCATGTCAGGatttttactctccctcaaacctttataataaaaattttttctgttaaacacaagaagatattgaagaaactgtaaccattgacttgcataacTAATACTAttgaggtcaatggttacaggtttccagcattcctcAAACTATCTgcttataaaaatattttgaagaattctgaaaacctgtaaccactgacttccatagtaaaaacaaatactattgaagtcaatggttacaggtttatggcattcttcaaaatattgtattttgtgtttaGCCTAAGAAAATACACtcataatgttttaaaattattgaaGAATGAGTGAACAAAGACAAAGTTTTACTCTCCATCAAACTAATTTTGCTTTATtgaacacaagaagatattttgaaaaatgtaaacctgtaaccattgacttccttagtaaaaacaaatactatggaaatcaatagtTACAGATCTCCAGCATACTTCAAAccttcttcttttgtgtttagcataAGAAAAGACACTCTTAAAAGTTTGAatcaagtaaatgatgacagaatttctgtTTTTGGGTGAGCTGCCCTCTTAATGCAGGACTGCCTTCTTGCACAACCGTTTCAGAATTTCGCAGGATGAACTCGCCTCGTGCATTTCAGGGtcaattgcattttttgtttcatAATTTGTAAATGAAATAAATGGATGTTCCCAAGA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-16 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Predicted to be integral component of Golgi membrane. Orthologous to human YIF1B (Yip1 interacting factor homolog B, membrane trafficking protein).

Ensembl:

ensembl_id ENSDART00000059285

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027185 lncRNA upstream 33366 49193865 ~ 49215023 (+) False XLOC_013099
TCONS_00027186 lncRNA upstream 33366 49199290 ~ 49215023 (+) False XLOC_013099
TCONS_00027187 lncRNA upstream 33366 49207132 ~ 49215023 (+) False XLOC_013099
TCONS_00027188 lncRNA upstream 33366 49211154 ~ 49215023 (+) True XLOC_013099
TCONS_00026013 lncRNA upstream 33537 49193824 ~ 49214852 (+) False XLOC_013099
TCONS_00026018 lncRNA downstream 14207 49282063 ~ 49359785 (+) False XLOC_013102
TCONS_00027189 lncRNA downstream 17705 49285561 ~ 49359750 (+) False XLOC_013102
TCONS_00027190 lncRNA downstream 57077 49324933 ~ 49359750 (+) False XLOC_013102
TCONS_00027191 lncRNA downstream 57090 49324946 ~ 49359354 (+) True XLOC_013102
TCONS_00027192 lncRNA downstream 88601 49356457 ~ 49357485 (+) False XLOC_013103
TCONS_00026014 mRNA upstream 910 49225552 ~ 49247479 (+) True XLOC_013100
TCONS_00026011 mRNA upstream 275713 48953963 ~ 48972676 (+) True XLOC_013097
TCONS_00026010 mRNA upstream 295387 48943875 ~ 48953002 (+) True XLOC_013096
TCONS_00026009 mRNA upstream 312388 48864367 ~ 48936001 (+) True XLOC_013095
TCONS_00026007 mRNA upstream 435393 48793536 ~ 48812996 (+) False XLOC_013094
TCONS_00026019 mRNA downstream 143561 49411417 ~ 49428855 (+) False XLOC_013104
TCONS_00026021 mRNA downstream 701712 49969568 ~ 50040161 (+) True XLOC_013106
TCONS_00026022 mRNA downstream 821144 50089000 ~ 50100149 (+) False XLOC_013109
TCONS_00026024 mRNA downstream 1008077 50275933 ~ 50356788 (+) False XLOC_013111
TCONS_00026025 mRNA downstream 1008481 50276337 ~ 50356788 (+) False XLOC_013111
TCONS_00026002 other upstream 695181 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026000 other upstream 809776 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00025985 other upstream 2671250 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00025947 other upstream 3673211 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025943 other upstream 3989292 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00026020 other downstream 143561 49411417 ~ 49447042 (+) True XLOC_013104

Expression Profile

//