RNA id: XM_021563331.2


Basic Information

Item Value
RNA id XM_021563331.2
length 2560
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110490068
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15582052 ~ 15587380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtggctttattaacttgttttaatgttgtttgcaaactgatatgtgacacgtattaattcCAAATCTGGTTTTTGGTCGCTTAATCATTATGAAAAGAGCGATGGTACGATTCAAATGCTGTAATTGTCTCTGGGACCAGGATGACGAGACTCTCTGTGACCTGACAGAGAAAAGGAGCAGAAGAGGCTTTGAGGGTTATGTGCCACTCATATTACTGAGCAATACCATATCTGGACATCATGGAGCTTGTAGTGGCCAAGGTCCTTTGCCTTCTGGGAGTGTTTGCCCTCATGTTGGCTGGGATTCTTGTCCCAGTGCGCCTAATGATGCAGGTGGATTATGAAAAAGCCCAAAACTACAGGAAGGCTCTTGCACTCTGCAATTCTTTTGGGGGTGGTGTATTTCTGGCCACTTGCTTCAATGCTCTTTTGCCAGCAGTAAGAAACAAGGTGGATGAGGTCCTAAAGCTGGTGAATATAACCACAGACTACCCCCTGGCAGAGACCATGATGATGCTGGGCTTCTTCCTCACCGTCTTTGTGGAGCAGGCAGTGCTCACCTTCAAGAAGGAGAAGCCATCTTTCATCAACTTGGAGACCTTTAACGCAGGGGTCTCCGAGGCTGGAAGTGACTCTGAGTATGACACTCCATTCATTTCACCCACCCGGGGCTCCCCTGTGGGCCACCACCATGGGCATCACCACGGACACCTCAGCCCCACTGAGCTGGCCAGAGCTGGGCCTCTGCGGCTGGCCAGCCTGGTCCTGGCTCTCTCTGCCCATTCTGTGTTCGAGGGGCTGGCCCTGGGCCTCCAGGAGGACGGGGCCAAGCTGGGAAGCCTCTTCCTGGGGGTGGGCATCCATGAGACCCTGGCTGCCGTAGCTCTGGGGGTGAGTGTGGCCAAAGCTGCTTTGCCCATGAGGGATGCCATCAAACTGGGTGTAACGGTCAGCCTCATGATACCCATTGGCATCGGACTGGGCATGGGCATCAATAGTGCCCAGAACCTGGCAGGCAGTATTGCCTCTGTGGTGCTCCAAGGCCTGGCTGCTGGTACTTTCCTCTTTGTCACCTTCTTTGAGATCCTGTCTCGGGAGCTGGAGGATAAACATGACAGACTGCTGAAGGTGCTCTTTCTCATACTGGGCTATGGGGTACTAGCAGGCCTAATGTTCATCAAGTGGTGATGGGCAGAAGAGGCCTTTTTAATGCACTGAGATGTCTATGAGTATCTTACTGGCCACACTTTGCATTGTGTGCACACCTGCACTACCACAGTAAACTTTTTTTGTTTTGATAAAGGGGTAGAGTAAATCAAGTTTAATAGTTTTTTTTCCTTTGCATTTACACGGGGACATGTTTGCTTACTAAGTAAGGCTACGTtactgttttagtttctgccatAGTGAATACTCCCATGTTCCTGCCATTGAGTAGCAATAGTAAAGTCAGTCACTTTGACAGTATGCTTTTGCATGTGTTGCCAGACACATGATTACATCTCATGTAGAGATATCAGGAAAAGTACTCTATAGCACTTCAAGTAAAGACACTGTTGTCTTATTGGCATTTTGCAAGATGAGTGAAGTGATATACAACTTTATGTTATAAGTAGGTTAACTACTGTATCCCTAATCAAATATAAGAACCAGTTCCCTGGAAACCTTTTGAGTAGCCTGTTGTATGGTCCTGATATCTGTCGTCCGAGATGAAATCCATGGTCTACTTTTTAAAACAAATTGTATTTTAAACATTATACATTTTAACAGGGAGTCACATTGAGAACCATGTATCTTTTTATAAATGATGAGGTACAGGTTTTATGGGTAGTAGAAGGTCtattatatttcatattttgttTTAATGATCATGAAGGATGGGAAGACCAATGTGGTCTCTACTGTACATTGTTGTCACATTTGTGCTGTTTGCAAATAATGGGATCCCTGTGACTGAAACCTTCAGACTTGGAGCTCTTGTTTGTATTATGTGTTAGGTGTCTTTGCCACAGTTCGCTATGACAGATAATTTTATACAGCTTCTTAGATGTAATTTAGCCATTTTCAACTAAACACTCCTATTTCAAATACTGCCCAGGAGTATCcttgtttgtttctttttttttctttctcctaATGTGAATGTGTAGAACTTGATTTGCAGAAGCCACTTACTGAAGGAAGCCTACAGGTAAAGGTACATTTATCAAGTTCAGAACTTGCTGCACTCTCTAAAATCTACATAAGATCAATTCAATtgttgttggtcacatacacatatttagcagatgttattgcgggtgtagcaaaatgcttgtgatTATATAAACATATAGTAGGCTAGGTCAGTTTGAATTTGTCCATGTCAATTTGTGCTTTTAGGGACTTTTAACAAAAGGAAACATTAATTGCTATTTTAATGCTGTATTCCAAAATAAATTGTACTGCTAAATTATTCAGTGGCAACCAGATTTCCTTATATAATGAGCAGTGGAAATGCACATACGTTATGACTTGTATTGCAACATGGTAATGGTTTAATAAACTGCTTTATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17128 lncRNA downstream 26092 15555713 ~ 15555960 (-) True G14515
TU16960 lncRNA downstream 52808 15528977 ~ 15529244 (-) True G14362
TU16958 lncRNA downstream 54657 15527119 ~ 15527395 (-) True G14360
TU16880 lncRNA downstream 83411 15445797 ~ 15498641 (-) True G14289
TU16854 lncRNA downstream 163966 15417697 ~ 15418086 (-) True G14268
TU17149 lncRNA upstream 26613 15611906 ~ 15612130 (-) True G14532
TU17117 lncRNA upstream 37588 15622881 ~ 15636124 (-) True G14504
TU17152 lncRNA upstream 42831 15628124 ~ 15698059 (-) True G14534
TU17237 lncRNA upstream 175183 15760476 ~ 15760683 (-) True G14610
TU17249 lncRNA upstream 185297 15770590 ~ 15770852 (-) True G14622
XM_021562869.2 mRNA downstream 1942 15557864 ~ 15580110 (-) True LOC110489874
XR_005037112.1 mRNA downstream 30559 15531412 ~ 15551493 (-) True LOC110489707
XM_021562712.2 mRNA downstream 30598 15531412 ~ 15551454 (-) False LOC110489707
XM_036950898.1 mRNA downstream 30598 15531412 ~ 15551454 (-) False LOC110489707
XM_021562527.2 mRNA downstream 30599 15531412 ~ 15551453 (-) False LOC110489707
XM_021563124.2 mRNA upstream 3639 15588932 ~ 15595302 (-) False LOC110490009
XR_005037302.1 mRNA upstream 3639 15588932 ~ 15595305 (-) True LOC110490009
XM_021563533.2 mRNA upstream 31153 15616446 ~ 15621641 (-) True zgc:113223
XM_021563655.2 mRNA upstream 53678 15638971 ~ 15682862 (-) True LOC110490301
NM_001160537.2 mRNA upstream 319891 15905184 ~ 15907139 (-) True ga45b
TU16758 other downstream 241171 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 398510 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 399989 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 408022 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 622784 14956025 ~ 14959268 (-) True LOC110487385
TU17863 other upstream 603711 16189004 ~ 16216296 (-) True LOC110531395
TU18158 other upstream 945754 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 1275356 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 1546127 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 1546428 17131721 ~ 17136357 (-) False G16100

Expression Profile