RNA id: XM_021563124.2


Basic Information

Item Value
RNA id XM_021563124.2
length 1947
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110490009
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15588932 ~ 15595305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagGCACGCACACTGACGTAAGGACGCATGCTTCAGCCTACGCAGATATGACGCGTCACACATGCGACGAAAATCAACACATTTTTTCCCCCATCACCACCAGCTAACGTTACTGCAAGGAACGTCTGAAGCAAAGGCAACTGGGTCCCTCGCAATACACATTCTACTGAGAGGTTTGGACCTCAATCCAAAATGACAGACACAAAGCGTCTTGCCATCTCCATCATTCAGTTTCTTCATGATCAACTGGGCTCTGGGAGTCTATCGTCAGATGCTCAGGAAAGTTTAGAAGTTGCAGTCCAATGCCTGGAGACTGCCTTTGAGGTCTCGACCGATGACCAGACCCTATCTGTCACTCAAACATTACCAGAGATTTTTGCCTCTGCGACACAGAAGCATCCCGAAACCTCCCAGGTGAAAATAAACACAGCCACAGATTCCTCTACTGAGGAGGAAGtagcagaggcagagagactcAAAACTGACGGCAATGATCAAATGAAGGTTGAGAAATTTGGGGCAGCTGTGGAATTCTACTCAAAGGCTATTGCCATAAACCCCCGGAATGCAGTCTACTACTGCAACAGGGCTGCTGCATACAGCAAACTAGGCAACTACGCTGGAGCAGTTCAGGACTGTGAACTTGCCATTGGGATTGACCCAAACTACAGCAAAGCATATGGAAGAATGGGGTTGGCTCTAGCCAgtttaaacaaacacacagaagcTGTAGGTTATTACAAGAAAGCCCTAGAGTTGGACCCAGAGAACGACACCTACAAATCCAACCTGAAAATAGCAGAGCAGAAAATGGAGACTCCAAGCCCGacaggaggaatgggaggagttGATCTGGCTGGTTTGCTCAGTAACCCTGGTTTCATGAACATGGCGTCCGGTTTGATGAACAACCCACAAGTACAGCAAATGATGTCGGGGATGATGTCAGGAGCTTATGGGCCAATGGGAGCTCCAGCAGTGCCTGGGTTAGGagcagggtcagggttaggagccGGACCAGGGTTAGGAGCCGGACCATTAGGAGCTGGACCAGGGTTAGGAGCCGGACCGGCAGCAGGAGTTGGAGTAGTGGGAGCTGGTCCAGGTGACATTTCTGGTCTCATCCAAGCGGGCCAACAATTTGCGCAGCAAATGCAACAGCAGAACCCAGAGCTAATTGAACAGCTGAGGAGTCAAATTCACAGCCGGACACCTAGTGGTAGCAACGAAGAACAACCTTGACCCTCAGACAGAGGAAGATTTGTGTGGAGAAGTGAagacatggattttttttttctatgTATGATTTGTATTATCTCCCAACTCTATGGACAAAAAGCTTTTCATCACTGAGTAATTATTGCATGTGTGCTCCACCCCCCCTGTCTTTAAGGAAACTGATCAGCAAAACCTTGCGGGAATGATGGAATTTGATAAACCTGTTAACAGATATCTAGTCCGAAGTGTCTGCAATGTCACACCAGTGTAGCTCTTGGTTTAGCTGTTTAATGTTACTATTCCTTGCCAGTGAACTGTTGTCCGAactgaacacccccccccccccccccccccgtgaacTACATGCAGCTGCATCACTTGAGCTTTATCATTTCAGGTACACAGAAACACCTTGAGATTATTATGCGATGATACAGTTTAGCAGTCATATAAATTTGAGAAGCATCTATTTGTACAAAGAAATACTGGTTGGCAGGGATGGTATCTAGAGTACTGGCAATATTATGGGAATTTCAAATTAGCATATCAAATAGGACCTATTGGTGTCCTCCGTAATCCAGGAGTTGTTTAAGCATGATACactgtttttgttattttataaTGCGAATGTCAGTGTTACACTGTTTGGGTTTTTTTCTAACGTGGGTGGCTGTCTGTTTTTGTTCACAATCTTTGATTAAATCATACTAATAAATTACCCTAACATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17128 lncRNA downstream 32972 15555713 ~ 15555960 (-) True G14515
TU16960 lncRNA downstream 59688 15528977 ~ 15529244 (-) True G14362
TU16958 lncRNA downstream 61537 15527119 ~ 15527395 (-) True G14360
TU16880 lncRNA downstream 90291 15445797 ~ 15498641 (-) True G14289
TU16854 lncRNA downstream 170846 15417697 ~ 15418086 (-) True G14268
TU17149 lncRNA upstream 16604 15611906 ~ 15612130 (-) True G14532
TU17117 lncRNA upstream 27579 15622881 ~ 15636124 (-) True G14504
TU17152 lncRNA upstream 32822 15628124 ~ 15698059 (-) True G14534
TU17237 lncRNA upstream 165174 15760476 ~ 15760683 (-) True G14610
TU17249 lncRNA upstream 175288 15770590 ~ 15770852 (-) True G14622
XM_021563247.2 mRNA downstream 1552 15582052 ~ 15587380 (-) True LOC110490068
XM_036951099.1 mRNA downstream 1670 15582052 ~ 15587262 (-) False LOC110490068
XM_036951283.1 mRNA downstream 1698 15582052 ~ 15587234 (-) False LOC110490068
XM_021563411.2 mRNA downstream 2712 15582052 ~ 15586220 (-) False LOC110490068
XM_021563331.2 mRNA downstream 3639 15582052 ~ 15585293 (-) False LOC110490068
XM_021563533.2 mRNA upstream 21144 15616446 ~ 15621641 (-) True zgc:113223
XM_021563655.2 mRNA upstream 43669 15638971 ~ 15682862 (-) True LOC110490301
NM_001160537.2 mRNA upstream 309882 15905184 ~ 15907139 (-) True ga45b
XM_036952238.1 mRNA upstream 381074 15976376 ~ 15990475 (-) True LOC110530936
XM_036952535.1 mRNA upstream 400134 15995436 ~ 16075795 (-) False LOC110490953
TU16758 other downstream 248051 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 405390 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 406869 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 414902 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 629664 14956025 ~ 14959268 (-) True LOC110487385
TU17863 other upstream 593702 16189004 ~ 16216296 (-) True LOC110531395
TU18158 other upstream 935745 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 1265347 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 1536118 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 1536419 17131721 ~ 17136357 (-) False G16100

Expression Profile