RNA id: XM_036952238.1


Basic Information

Item Value
RNA id XM_036952238.1
length 5285
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110530936
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15976376 ~ 15990475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCGCATGTACTTTTCCCTCTTCTGTGAGAGGGTGGGACTCCAGTAGTTTACATGACATTGGCTGAACTTTGCCTGTGCTGTAAGGTGCTCAAGAGACcgtaatatatatatagagttaGAGCGATAGATAGAAAGTGGGAGACAAGACATCAGACAGAGAAGAAAAACTGTTTGTCTTGTTCGCTGTATACCGCTTAAGAGACTCTCAGTTGCCGCATCTGatgattaccaggatgtgttgACCCAGAATGAGGGAGACCTGATAGGGTGCCACTCTCTCCTGCTTAGTGCCTCAGAAATCTCACTGTCTACACAGGAAGACACCACAACCCAAGGAACCACGGACAGCACACCCAGAAAGTGGCTGCTGCAGCCCATGTCACCCAAATTGGAGCAGACAACAGATCTTCGCACCATGCTCAGCCCCACCACGGACGAGCCCTTCAGCCTGGACCAGAGCTGGACCTACAACAGGAATGGCAACTCTTCTGCTTTCAGTTTCGACAGCATCTCCGTAAACCACACCCGGTCCACGGTTGTCGTATCTTCCCAGCAAAAAGaggtgcaggccaggcaggtGGTGGTGTCGGAGGAAAACTGCGGCATCACCAGCGAAGACTGGCAAGCCAGCAGCTCTAGCAGTCCCAGCAGCACAGGCTCCTACTGCGGGTTCTACTCATTCGTGGACAATCCTGCAAGCCCCGAGGCAGAGCTGAATGAAGCCTGGACGTTGTCCCCGGAAAGGCAAGCCACCCTGAAAGAGGAACACAGCTTCAAACTGCAGACGTATGTTGGTGGGAAGAAGCCAGGGAGTCTGTTCAAGGAGGACAAGGACTCCCGCTACCAGGTGAAAACAGACAACGGTGCCCAATtgaaggcagaggaggaggagaagaaactTGGGAAGGAGATCATGCATAGTCATGCCCCCCCAAAAACTGCCACCTACAAGGAACAGTGGAGTGCACTGAGCTTGTCACCCAACAAGCTGCTGGAAGGGTTCAGCTTGTGCTATGGTCCAACCAGTAGTAAATCTGAGCCCACACCAGCAGCCGAGGCTGGTACCATCGACAATGAGCAGATAAACTTCAGCGCAGCGCGAGAGCAGTTCCTAAAGATGGAACAGTCCAGGCTCAACCCCTTTCTGCAGAGTCCCAGCTCTCTAAAACCACAAGGAAGACGGTGGCAGTCAGAAGACAGCTTGCTATCACCAAAGAGTGCAAAAAAAGAAGACCACTCTACAGTATGGTTGAACCAAAGTCCGACACCAGTGAAACAGCAGGATGAAGGGGAAGTCATCACTGCCGGAAAGGTGACAGTGTACCACACAGAGGAGAAGGTAACCAAGAGCCAGGGTAGTCTGCTTTATGACCTTGACTCTGGACTGGAGGATCTATCAGGGGACCCCAGTGTTGGCTACACAAGTGATGTAAGCATATCCAATGACAACTCTCAACCAGAAAGCAAGGCCACCCAATCGGTAAGTGGTCACAGAGAGACGCCCATTGAGAGGGAGATTCGTATCactcaggagagagaggagagccttCGGAAATTGCGGGGTATTAAGCACACCGATGTCCAGGAGATGGTGGAGATCAAGACCAAGTATCTGCTCTCCCAGCCTGCACCACCACGGACACCTGTCAGGTCCAAAGAGAATAATCGGGTGAGCTTCTTCATCCAGCGCGAGATTGAAAAGGACAGCCAGAGGGAAGTGGACCTGATGCACCAGGGGAGAGTCCCAAGTCTGTATGACAGGGGAACTCCACAGGAACTGGAGGATAGGAAGAAGATCTTTGAGCTGCCAGACCAACCTGGAGCCAAGGAGAAGAGGAAAAGGGCTTGGTCTTCACCCAGGGTCAATGGGAGGAGTAGCAGCTCAGATAGGGAAGGATTCCCTTCCACTTGCTTCCCTAACCGGCACTCAGAAGAGACAGAGTTGTACATCAGCCACATGAACACCGCTCCAAGCGTCAATACCACCAGCAAAGGCTGGGGTTCAGATTCCCAAGACTTCACCAGAGTACTGCCAAGTAGCCTCCCAGAGGAGAGTGTTACATTGAAAGGCCATGAGACCACAAAGGCGGCAAGCTCTAAAGTCACAATAGTGGTGAAGACGACAAGTACTAGCGAAATAGTAAATGACCCATCGTGGTTAGTGCAAAGAAAGGAGCCAGTTCCAGCCAAAAGCTCCTCAGCTAAAGAAGCCTCCTTTTCGTACTCTCCGTCCTCCCCTACACCCACTGCTTCTGCAGTTCAGGGGTCTGAGCCGAATGATAAGCTTTTTCAAACCTGGAGGGCGCACCTGAATTCTGGTAGCCCGAGACCTCAAAGACCAAATGCTCCAGATGTTATCCAGAAGGAGATTGAGCAGGATCTAAAACGCGAGCAGGAGCACCGGGAACTCCGGGAATCCTGTGGCCTGTCCGCCTCTATGGAAGGAAACCTGGACTGTGTAGGACGAGACGCTAAAGACACACATCAATCGCAAAGCCTGCAAAGGGTCATCGTGGAACAGGAAGACTCTGTCTTCTATGAGAGCCCTTCACTTCTTGTAGAGCAGACAAGCTTGACCAGACGGCCCTCTTCCTTTATCACTCCAGTATCAATGCTAGATAAAACAGACAGCGCAGCTCCCTTTTCCCCTTCCATTCGTCCCACTGCCCGACTTCCCTCCTTTTCCATAGTGACCGCCCAGCCATGGGGCTGTCCAAGGCCCACCTCCCCCGTGGATAGCAGGGTTTCCCCCATGTTGCCTGCCAGCCCATGGGCAGAGACAGGTGGCTCCCCTGGGACACCCACACAAAAGGGCCTGACCGAGACATTGCTAGAGGattttgaggagaggagagtcaaactgaagctggaagaGAACGCTTATGCAGGAATTCAGTGCATTGATGATGTGAATAATGAGGTCTTGGAGGCCACCCGGATCACCAGGCACAAAAACAAGCGGGCACTGCGCTGGGAGGCTGGTGACTACACCAACGAGTACCAGTCCTCTCCCCTGGAGGGCATGGTGAGAGAGGGCagaaaggagaagagatgaaAAACAGTCATCTTAGGGTTGTCCCATCTCAGCACATATGAATATACGCTCTGACTACACACTACCAAACCTGCTGGACATATTGATTGGTCCACTTTGTGATAAACTCCTCATCCATCAACATCAGCCACCTACTAGAGCAGGTGACCTTCCACGATTTAAAAGAAAAAAGACAAGTGAactgaaaaaaaatattcaaTAAAGACAGGACAAGTTTTAAATGCCATCGGAGGTGGATTGCAGGAAGGGAATTTAAGAGGAGTTCTGTGCCTGCTAAGAATGCACATTAGCGTATGAGTTATTTTTAAGTCTGGCAGTCACTGGCTGCTAGGTAACTTTGATTAGGCCTATCCGCCTTCAAATGACTGCATAGAAAAAAATGACAGAGCTATTTTTGTCTTGTCAGTTGTGCTTTGCAAAGCAAAAACAAGCAAGAAACCATCAGATATCCATGATGTACGGTTTTATATGGTTCAAATTTCCAAACCAATATCCAATCCAATGAAGCACTTGCAGTACCGTCTTCTAGAAATGTTGACATTTGTCTGATTATTATATTAATTAAGAGCTACAGCAGATAGCAGTATGTTTGTGTTCTTAATTTGACTTGAATGTGCTTTGACGGCAGAAATTAGTATACAACTTCTGACCTAACTGGTCAGGTCCTTATTGCCTTTcttagggctcgattcaatccgtatcACGTACAATCTGCAGTGTAGCGTGATTGAAATTGAAAAGGCAATGTTAACGCAGTCAACTACATTCATAGTAAATGCTGCacgtcggctcaatcggaaatgacgGTACCTTTACATTTTAATTGTGCCATCTTCTGTGACatggattgaatcgagcccttgTGAGATATGTACAGTTAGAAAGATTCCTTGCTTACCAGTCGGCTACTGTAAATGACAAACAAGTTTGATCACACTCTAAACCTGACTGTTTGCAACATGACAAGACATGCTTTTTATATAGACTATTGTAAGAGATACTGCTGAAAATAGGCCAGGTAATGTAGATCTTATAAGAGATTCAACTCTGCTACATTTGGTGGCAATGGTGGGATCCACTACTTATACAAGCGGTGACGTCAAATCGGATGCAATGTGGAAGTTGATCAAATGATAGTGAATCTCAAACTATCAAATGGGGTAAAACGTCGCCATCTGCTGGGTAGACAATTGAACTGCTTGTAGGGGATTTGAGAGTGTCGCTGTAAAGTTAAAACATATTTAATCCCTATTTACACCTTGCATTAACATGATAGTCCAATTGTAGGAATACATCTCGTCTGAAAAAAAGTAGAGATGAGTTATACTTCATGGGTTTGAAGGACAATGATGTATCCCAATTTCACCCACATTCATGCATCAGTGTGCCTGTACCCTAAAGCTGTTGCAGTATAGGGAACTGCTAGGCACAACACAAACCAAATCCCCACCCACCCCCCATGACCTTCCCCTCTAATTTGtttgagaaagaggagagaggacacaagGAATTGAGGAGAGACTGCAGTCGATTTTAAAAGCGAGTCAAGTCTAAcggatctacaaatcaccttatTTCATAAATAACTACAATTGTTTTTTCAGTCGGTCATAATTTAGCTATGAAAAATCACAGTTTTGATGCTCTTGAACACTGCCAATAATTTACTTTCTCATTCCAGCCGGGATTCAATCCGACCGTATATGGTCGATCGACAATGCAGCTTTAAAAGGTAGATGCCGATTGAGTCATTGCAGCTTTGCCCGTGAATATGATCTCCACGAacgcaggaacattgcctttaaaagctgcAATGCCTCGAACCCACAATTGGATAGAATCCCGACCTCAAATGTTTGACAGCACTGGCAGAACGAATGTGATTGGTTGGATGAAAGCTCAGTGCGCAGAGCTGAGTGACAGGTCAGTAGATGGAGTTTACAGGTaagagtcaaataaagaaaaGGCTCTCAGGGAGGGAGGTTGGAGGGCGCAAGGTCGCCAGTTTAAATACCATTGTGGCTTTTGTTTCCCAACCTTAAAAATACTTAACTAATCACATTTCTAATCTACTGGCCTTCTAAATGACTTGACAGCTTCATATGTGAAAAGAGAGGCACCCATCCCCATGCTGGCGCAGTGGACTAGGCACTGGGAAAGGGACCAGAAGGTCCCAGGCCCTAATCTTGCCTCGCTTTCATAGATCAAATAAATTTGTTCTATacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17714 lncRNA downstream 21801 15954347 ~ 15954575 (-) True G15067
TU17408 lncRNA downstream 74690 15901457 ~ 15901686 (-) True G14772
TU17398 lncRNA downstream 78206 15897580 ~ 15898170 (-) False G14763
TU17399 lncRNA downstream 78206 15897580 ~ 15898170 (-) True G14763
TU17392 lncRNA downstream 84946 15891223 ~ 15891430 (-) True G14757
TU17771 lncRNA upstream 52949 16043424 ~ 16044070 (-) True G15117
TU17855 lncRNA upstream 187802 16178277 ~ 16180984 (-) False G15194
TU17860 lncRNA upstream 187802 16178277 ~ 16181159 (-) True G15194
TU17862 lncRNA upstream 191225 16181700 ~ 16181980 (-) False LOC110531395
TU17864 lncRNA upstream 193455 16183930 ~ 16184262 (-) False LOC110531395
NM_001160537.2 mRNA downstream 69237 15905184 ~ 15907139 (-) True ga45b
XM_021563655.2 mRNA downstream 293514 15638971 ~ 15682862 (-) True LOC110490301
XM_021563533.2 mRNA downstream 354735 15616446 ~ 15621641 (-) True zgc:113223
XR_005037302.1 mRNA downstream 381071 15588932 ~ 15595305 (-) True LOC110490009
XM_021563124.2 mRNA downstream 381074 15588932 ~ 15595302 (-) False LOC110490009
XM_036952535.1 mRNA upstream 4961 15995436 ~ 16075795 (-) False LOC110490953
XM_036952453.1 mRNA upstream 4961 15995436 ~ 16075796 (-) False LOC110490953
XM_036952484.1 mRNA upstream 4961 15995436 ~ 16075796 (-) False LOC110490953
XM_036952508.1 mRNA upstream 4961 15995436 ~ 16075796 (-) False LOC110490953
XM_036952292.1 mRNA upstream 4961 15995436 ~ 16075798 (-) False LOC110490953
TU16758 other downstream 635495 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 792834 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 794313 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 802346 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 1017108 14956025 ~ 14959268 (-) True LOC110487385
TU17863 other upstream 198529 16189004 ~ 16216296 (-) True LOC110531395
TU18158 other upstream 540572 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 870174 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 1140945 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 1141246 17131721 ~ 17136357 (-) False G16100

Expression Profile