RNA id: TCONS_00027189



Basic Information


Item Value
RNA id TCONS_00027189
length 617
lncRNA type read_through
GC content 0.45
exon number 4
gene id XLOC_013102
representative False

Chromosome Information


Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49282063 ~ 49359785 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTTCACTCAGAACAACGGCTGTACACTCGCTGACAGAGCAAAACATTATAAGTATTGTGCCCAGCAGGCCTGAATAACTCCTTTTGAGACCCGCGTCAAAGGCCAGAAAGAGAAGATGGAGGAGATTGCACATCGATGGGCTGCTGGAGCCGTCATTATTGTCCCGTCTCATCATGATCAGATATCTGTCATCTCACCACAAGATGAACACAAGGCCCTTCTGTTCCATTTAGCAGAGCTCTTTATGACAGGCCTCAACAAAGGCAGCGACGTGTGCAAAAACACACAGCTCTGGTGCttcttgtgtctgtgtgtgtgtgtgttcatgctccAGTGACACACACTGAGTCGGCGGCACAAAACCTGCGGCCCCTGGAAACCCTGCAGAGGAGGAGATCATGACCCCTGACAGCTGCCCCGCTACAgcctccatcatcatcatcagggtTTATGTAGGATTGCATGGGAAACTGGGACTATACTATATTTGTAAGGTCTTATTTTATAGTTCTGGCTTATTCTCTGCAGTTTTTAGTTTGTATCTCACAATGAACTGTGAAGactgttatgatgcatttaattgttaaattggtatttttattaaaaggaaaaaacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00027185 lncRNA upstream 70538 49193865 ~ 49215023 (+) False XLOC_013099
TCONS_00027186 lncRNA upstream 70538 49199290 ~ 49215023 (+) False XLOC_013099
TCONS_00027187 lncRNA upstream 70538 49207132 ~ 49215023 (+) False XLOC_013099
TCONS_00027188 lncRNA upstream 70538 49211154 ~ 49215023 (+) True XLOC_013099
TCONS_00026013 lncRNA upstream 70709 49193824 ~ 49214852 (+) False XLOC_013099
TCONS_00027194 lncRNA downstream 546274 49906024 ~ 49913858 (+) True XLOC_013105
TCONS_00026943 lncRNA downstream 644984 50004734 ~ 50005794 (+) True XLOC_013107
TCONS_00027195 lncRNA downstream 684566 50044316 ~ 50046147 (+) True XLOC_013108
TCONS_00026023 lncRNA downstream 730891 50090641 ~ 50091268 (+) True XLOC_013109
TCONS_00026944 lncRNA downstream 767739 50127489 ~ 50127777 (+) True XLOC_013110
TCONS_00026015 mRNA upstream 17705 49248389 ~ 49267856 (+) False XLOC_013101
TCONS_00026017 mRNA upstream 20711 49248452 ~ 49264850 (+) True XLOC_013101
TCONS_00026016 mRNA upstream 26305 49248434 ~ 49259256 (+) False XLOC_013101
TCONS_00026014 mRNA upstream 38082 49225552 ~ 49247479 (+) True XLOC_013100
TCONS_00026011 mRNA upstream 312885 48953963 ~ 48972676 (+) True XLOC_013097
TCONS_00026019 mRNA downstream 51667 49411417 ~ 49428855 (+) False XLOC_013104
TCONS_00026021 mRNA downstream 609818 49969568 ~ 50040161 (+) True XLOC_013106
TCONS_00026022 mRNA downstream 729250 50089000 ~ 50100149 (+) False XLOC_013109
TCONS_00026024 mRNA downstream 916183 50275933 ~ 50356788 (+) False XLOC_013111
TCONS_00026025 mRNA downstream 916587 50276337 ~ 50356788 (+) False XLOC_013111
TCONS_00026002 other upstream 732353 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026000 other upstream 846948 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00025985 other upstream 2708422 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00025947 other upstream 3710383 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025943 other upstream 4026464 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00026020 other downstream 51667 49411417 ~ 49447042 (+) True XLOC_013104

Expression Profile


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