RNA id: XM_036952484.1


Basic Information

Item Value
RNA id XM_036952484.1
length 6550
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110490953
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15995436 ~ 16075800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTGCGAACAAACGATTCAACATTGCGGCGTATGAGCTCAAACGCGGAACAAAATACATCCTCATTAAACAGGGAATGGTGGGAGAAGCGTTGTGAAATGTATAGAAGTTATTGTGAACGCATTAACAAAGGCGAATAATTATTTGGGCCATTGATTTAAAGGGTTGTGTCTTGTGTGTTGCCAAATCTGCGGGACGCGCGCGTTGCTCCCCATCAAAGCCGTCTACAGGGGAGGGACATAGCACATTTCTCGACTTCACCTCTCTGATTGAAGGGGAGGGGGTCCGTAGACCGAAATTGATGGTAGTGGGCTACTGAGAAAGACGAGCTACTCCTGTTGATAATAAAGGCAAAATACACATTTCAGTCGAATACAGCTGAGTTGGTGAAACGGGCCGGTGGTGAAACATGGAGATGTCTGAGGGGCTGTCACAGCAGGAGAGAATCCAGGCTATAGCGgagaagaggaagaggcagaTAGAGGTCGAGAACAAAAAGAGGCAGCTGGAAGATGACAGGAGACAGCTTTCACATCTCAAGCAAAAGTCCCTGAGGGAAAAATGGTTGCTAGACGGAGCTGCTGGGTCGGAGCAGGACGAGGCCAAGAAACAGTTGGCGGAGGACGAGACCAAGCTCAAGGGGATGGAGGAGAGCATCATTAGAATGGAACAGGAACTGGAGGAGCTGGAGACGGGCGTGTCGGTGACCTCCACCAAAGAGAGTCTGACAGATGCAGCCAAGGTGGAAGAAGCCAAGACTGCCGACAACAAAgctcctGCAGGCACTGTTCAAGAGGTCAAGGAAGTGCTCAAAGTGCACAACAGCCCTCGTCTGGACATGTCCGGAGGTGCATCAGATTTAATGAGAACAGtgGTACACGAGGTGAACGGGGAGAACGGGGTCCACCAGCTCAGCGCCAACGAGGTGGACGAGCTCATCCTCAAAGCTGATGAGTCCATGATGAGCGACGCCACCACCGCTGGCGCCACCTACACCACCCCTGTCTTCCCCACCAATGCTGAGTTGGCTGCCGAGCAGCAGACGACACCCAAGAAGGAGATCACAGGCATGGAGGCCAAGGCAGGTGGCGCTAGTCCCCAGCCAGGTGGAGGCGAGATGGAGGCCAGCGCCGAGAACCCCGTCACTATGGTGTTCATGGGCTACCAGAGTGTGGAGGACGAGACAGAGACCAACAAGGTGCTGGGCCTGGAGGGTACCGTCAAGGCCCAGCTGGTGGTCATCGAGGACGGCGAGGGCAAGAATGTGACGGTTGGGCCCACTCCAGCCACCGTGACCATCACTGAGGGAGGCGCCAAGGAAGAGCAGTCTCCCCCACCCAACGGCAGCGCCGCTGACCCCGCCAAGACCCCCCAGGAGACATCCTCCGCAAAGGAGAAAGGGGGTGAGCCAGAGGGGGGTACCACTGAGTTAAACAACAAGGAGAAGCAGCCTTGCAAGTGCTGCACCATCATGTGAGCAACTGTTTGTTGTGTGGCTGAATTCCCCCCGGAACTTGACTTTTCAAGGAGAAATGACAAACCAACAACCATAACGTCATGACAACCAACAAACTCCTCCCCCCCGCCCTGAAAAAAAAGGAATACATGTTCTTTATCTTCTGATAGCCGGCTGTGGTTTCCCGACTTCGTTTGAAGTATTTCATTATCATCTCAtcgtctcctttccttctcttgaCCTTTTTTTATTATTTCAGGTTTGGTTGTGCGAAAGGAGAGCAATCCCTACCTCCTCACACTTTGAGATttctgagggagagaggagatagaaaaggaaggatagaaagagagaaagaaagaggaaggggTTTGTTTACTCACCCAGCATTGTCCAAcaagcatttttttaaatgacatctcTTATACACCACCATGAATTGTGTAATCTTAACTTTCTGTATGATGGACAGATAtatctctctatgtatctctatatatacattgtttaTTTTAAAGAtatatttattagactttttttttGAAAATGCCCTCTGGAAAGTGTTTTTGACAGAAGCATGGTATTCATTGTTTTTTTCTGTCCTGTGCTAGAGCATTTTAGATAAAAACAGGGACATGATGGAACACTTGGAATATTTATGTTAGAAAATTCTCTTGGATTTTGATTtccagaaaaaagaaaaaaaaagtaactTTGGAATGTCTGAGACAGACACAACACTGATATATGGGATGTCTGAGACAGACACAACACTGATATATGGGATGTCTGTGACAGACACAACACTGATATATGGGATGTCTGTGACAGACACAACACTGATATATGGGATGTCTGTGACAGACACAACACTGATATATGGGATGTCTGTGACAGTCACAACACTGATATATGGGATGTCTGTGACAAACACAACACTTATATTTAGAAGTGACATGCAATGAGACGTCAGTGATATTGATGACATCGAagtactgtgtgcgtgtgtgtatgagcatgcatgagtgtgtgtgttttggtttaaAATGACCTCATTGGTCCTTATAtcatcctacactacactacccacaaTCCCCATCACCTATTTTCTTTCTGGAAGAAAAAACAATCCATGCATTTTTTTTGTGATTTCCCTGCAACCAAATCAGCTACACTAGTTCGACAACACTAGTAATGAATTGAATAACGTGTGAAGGTCATTCATACCGAAGCTTGAGACTGATGAAATTAATGCCCATCTGTAAGGCTTGATGTTTGTGTGATTCGCCCCCACTTAACTACATTATCCAGAATACCACTGCCCCTTTAATATAAATAATGTTGCTTACAGCTGCCTTTGTGATAACACTAACTACTTTTCATTAACTCATTGACATAATCCTGGCTCCTGATGTTATGACCTAGCAACTAACAGCTGGGTTTTGAAATAATGGTCGGCGTGGACAGGCCCTTCCAATGTCCCGAAGATTTTCAGCTGGATATTAACTACTGTGGAATTGGTGCATGGAGCATAATCTGTTGTTTTAAATGGCAGCGCATATCCTACCAAACTGTGTTGCAAATACCGCAAGAATTTGCTCCATTCAGACATTAAGGAAGAGTGACATTTGAATGGGGGTCGGGGGTCATATATTTCCCTCAGAGTGTGTGGGAGAAGATTCATTATAAGAGTACTTGGTTTTCTGTTTTCCTCTTTGAACTCTACTGTCAGGCCTTGGTTTTGTCATTTGTCAACGAAACCAAAGAAAACCGTTCAAATAGGCCTACTTTTCATTGTGTatctatcacaggaggttggtggcaccttagttggagaggacgggcttgtggtaatgcctggagcggaatcagtggaatggtatcaaatacaccaCACACGTGGttcccatgtgtttgataccattgcaTTTGCTCGGtcccagacattattatgagctgtcctccactctgcaacctcactggtaTCTATCGACATGTGAGGCAAAAAGCAGGgaatttcaacttcaacattccAAGAAGTTTTCAGAATCCTTTCCTACCCTCCTCTGAGTGGTCAATTTTGCTCcaaatgttgtgtttttttttcagaGAACAATAGATGTTTTTGCAGTATGGCTACATTTGAACAGCTGTGTTTAACTTTCCCttggcttgtgtgtgtttgttagctGCAGCTATAGCATTCTTTACATCTTACTTATTTCTGCCATTTTGGAGCCAAATTTCCAGCTAAGCTGAGGGTCATGTTATCATTGTCCAGTGTATTTTTCCCAGTTTTGAGTTGAGTCAGTTGAGTTGGATTAGGTAAACTAGGAGTCAGATCTTTTCAACCCTACTCACTGACACGCTCATATGTAACCGTGGTCCAAGTGTTATTATTCACATCCgaaataaaacaaacattttgttttcaaagaTGGTCTGCATTATCTTGAAGTGAGTCCAAGAAGTGAGCCAGAGGTTTGCATCATgtttgcctatttctcttttaATATTGTTCCATGTGTATTTATACCTTTCCATTGATATTGATAGAGCTCTATATGTTATTTAAAGGGTTAACGTCTTTGTGAGGGTTCAAATCAAGAACATGATGGAGAATAGATTAAAAATAACCAGGTCTGATAAGCCTTGTCAAAATTATGCTGGAGAATCCATTGCACTGCAGAAAGAAACCAAATGGAACATCTATTCATTTGAATTTgggtgacagggtagcctagtggttagagcgttggactagtaactgaaaggttgcaagttcatatccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctatgctgttattgaaaataagaatttgtacttaactgacttgcctagttaaataaaggtaaaaaaatgatCATGTAAAATATATTATGAAATAATATTCTTTGCCAATCCCCTTCAATCCCACTTCCTCATGCATCAAAGGGACAGGGCAATCATTGATAGGCCGACACATCCTCCAATATGCTGCTCAGCAAGGAGCATAAAAAGCTGACACAGTGAAATGTGCGTTACTCTATAGGAGTGGTCCCAAGCTTTCTCGGTTAATGTACTGAATTTTGTTCTGCCCAgagtaccccctcatgtgcattttaccagtaggcctatggtcgcatgagtcttctcaagtatcctctgtggataggccaagtacctccAGTGGTCCTAGTACCGGTCCTATCACTGCTCTATAGGACAGTCACACTATCTGTAGTGTTGGTCTAGAATACTTTCGATAAAAAATACTGACTTCGAATTCGCTTAGGCATTGCTGACGACCAGTCCTTGTCGAATAATATTCCCACACTGCTGGATCCAAATCTATGCAAGTACTCCCATTCATGAAAGCTGCCAACGTTAGCATCAGCAAAATCATCATATAGCTATAGCATTGAGGACAAGCAGCAGCACTGATAAGAGTTCATCAGTACATCACAAAGGCCAAGCATTGAACCATGCCCATCCTTTCCTTTGCAAAAGATTAACCTTTTTTATTTCCTAAATATCTGCTTGCTAACAGTTTACGACATATGTGTGTGGCTCAGCCTCAGTAGCTGTTAGCATAGATTTGGTTTGTCAATTTCAATTTGAACGGTGGAAAGAAGATTTCATATGTTGTCACTGCCAACATGGCAGCACATCACATGTTGGGATGGATACATGTGGGTTGTGGGTTTTTGTGGTGCTAAATCATTGATAATGTTATATCTGACAGCCAAAGTTTAGATATTATTTTAGATATACATTTCTGCAGCTTGTGTTTCAAGAAAATCACTGATATTTCTATTTGCAATAGGAAATAGTGTCAGCAAGAGTCATTTTTCTAGGCACACCTCAACAAGGAAGTGTTTAATCAGTTCAATTCCAAGCTTATTTGAAGCAGCAACTAGGTGTTCTGTTTTTAAAGTTTTTCTTTTAGGATAACATGCAACAGTCATCTCAAAACTGAAAAACATGAACAGTCATACATCTCTTTGTTCTAacacaaacatactgtacaaATGCACTTACTGTAGGGTGGTCAAACTGAAAGCCATAGTGTTCTTGGTGGAAGAAATCGTCCATACCATTAGAGTCAGAGAGAACATTGGTGACCATAACCTAATCAAATTTGTCCATCCACAATGAAATATGGTGACACTTAAGTTAAAAAAGGACTTACATAACACCTTCATAACATTTCTTTAGAGGAAAGAATTACATGGCACTTTGAGAGGGACTTGGAAATCAACAACACAGTGTTTCATTTTGTCTGTTCTATTCACACCGTTCATTTTGCTGCCTTCAACAACTTTGAGCTTCAAGGTTAACGAACATCAATGTCAATGAAGGATAATGAATGCCAATGATGTTCTTATGAAGGGTAATGATTGCATGGACATCTCCACTAAAGTGCTGATCCATCCTACTGAGCAGTGGGTGGAATTTACTCTTAACCACTGATGCAGGGTCAGATTTAATTTTATCCCTAATggctaaggttaggattgggagctatgtaatctgatcctagatctgtggtgaAGGGTGACTTCTGCCTCAAGCTCGTTTTGAATACCCAATACTTCTCCTTCCTCGGTCCCTCTGTCTTGCTGAGCTTGGTGTAGCAGCAGAGGCTTGTCGCCCCTGGCAACTACTGTCTGCACTGCCAGCGCCATGGTTACCTCATGACTCTTGCTCTGCAACAGCACCCCCCTGTTGGTTCTTATCAATATTTACATTAAtttctgacttctctctctctacacaccccCAATGCCTTGTAGTTTGGCCCCTGGTCAGGCATCTTTtttgtaaatgtgtatatataagtATCTACATATAAatgtctgtcgctctctcgtcCTCTTGTGTAGACTCCTAGATCTTTGTGCTCATGGCAGTCAGTCAGTGAAGGGCCCAGATAATAGAGTGGGTGTCAACACACTGCTGCTCTTCTTATGCTTTGTAGTTGCCAAGGTCTGCTTTCTCACAAACTGGAAAGTGCTGTAGAGGAAacaacaaataaaaatgtgacgTGCTTCaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17714 lncRNA downstream 40861 15954347 ~ 15954575 (-) True G15067
TU17408 lncRNA downstream 93750 15901457 ~ 15901686 (-) True G14772
TU17398 lncRNA downstream 97266 15897580 ~ 15898170 (-) False G14763
TU17399 lncRNA downstream 97266 15897580 ~ 15898170 (-) True G14763
TU17392 lncRNA downstream 104006 15891223 ~ 15891430 (-) True G14757
TU17855 lncRNA upstream 102481 16178277 ~ 16180984 (-) False G15194
TU17860 lncRNA upstream 102481 16178277 ~ 16181159 (-) True G15194
TU17862 lncRNA upstream 105904 16181700 ~ 16181980 (-) False LOC110531395
TU17864 lncRNA upstream 108134 16183930 ~ 16184262 (-) False LOC110531395
TU17866 lncRNA upstream 109249 16185045 ~ 16185275 (-) True G15199
XM_036952238.1 mRNA downstream 4961 15976376 ~ 15990475 (-) True LOC110530936
NM_001160537.2 mRNA downstream 88297 15905184 ~ 15907139 (-) True ga45b
XM_021563655.2 mRNA downstream 312574 15638971 ~ 15682862 (-) True LOC110490301
XM_021563533.2 mRNA downstream 373795 15616446 ~ 15621641 (-) True zgc:113223
XR_005037302.1 mRNA downstream 400131 15588932 ~ 15595305 (-) True LOC110490009
XM_036952630.1 mRNA upstream 38996 16114792 ~ 16136293 (-) True LOC110531327
XM_021564609.2 mRNA upstream 73916 16149712 ~ 16157673 (-) False LOC110491230
XM_021564688.2 mRNA upstream 73916 16149712 ~ 16157809 (-) False LOC110491230
XM_036952797.1 mRNA upstream 73916 16149712 ~ 16157809 (-) True LOC110491230
XM_021614590.2 mRNA upstream 105718 16181514 ~ 16295527 (-) False LOC110531395
TU16758 other downstream 654555 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 811894 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 813373 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 821406 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 1036168 14956025 ~ 14959268 (-) True LOC110487385
TU17863 other upstream 113208 16189004 ~ 16216296 (-) True LOC110531395
TU18158 other upstream 455251 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 784853 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 1055624 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 1055925 17131721 ~ 17136357 (-) False G16100

Expression Profile