RNA id: TU18315


Basic Information

Item Value
RNA id TU18315
length 954
RNA type TUCP
GC content 0.50
exon number 5
gene id LOC110492105
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16838135 ~ 16871992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGGCAGAACAACAAAATGCAGATTGCAGAAGGAATTTAATTACTGTGGGCTGACACTCATAAGGGGGAGCAGCCTACGTATTTGTAGTTTTGTAGAATTTCGAATAGTTCCCTCGCATTTTGAGAGGCGTTAAATCACAAGATTATTGTGCAACCACAAAGAAAGAGTGACAAAGAACGGGATTCGCTGGATATATTATACGGACAAAGGAAAGCTGTATTCTAACAATTGATTGTAAACAACCGAGCTACTACATTTAGGAACATTTGAAATGGTTTCAAGTTATTTTTCCTTCAGAACGTTTATTGGTTTCCGTGTTCCAGAAATGTAATGCAACGTAGCCTATTCTACAATTATAAAGGAATTCACTTTACAGTGACCTGCGATACGATTTGTTATTCTATTCGGAGTCAAAAGAAAGAGAAAATAATAGAGAAAGAGATTACCTATCGATTGAGATAAAACTGGAATTTTATACCCTGCAAGGAGACAGGAATATTTTAACGATATGGGAAAAAGGAGCCTTCCCTGAACTGTAAAAATGTATCCATCACACAGAGAAAGGGAACAACCCATCTTCAGTGTCAGAGCACACGTCTTCCAGATAGACCCGGCCACCAAGAGGAACTGGCTCCCTGCCAGCAAGCATGCAGTCACCGTCTCCTTCTTCTACGATGCCAACCGGACTGTGTATCGCATCATCAGTGTGGGGGGCACCAAGGCCATCATCAACAGCACCATCACCCCCAACATGACATTCACCAAAACATCCCAGAAGTTTGGCCAGTGGGCTGACAGCCGTGCCAACACCGTGTACGGACTGGGCTTTGCCACCGAGCAACAGCTTCAGCAGTTTTCAGACCAGTTCAAGGAAGTGAAGGAGGCAGCACGTCTTGCCAGGGAGAAATCCCAGGAGAAATTTGAACTGATCAACCCTGCGCTAAATATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18329 lncRNA downstream 4419 16855639 ~ 16856230 (-) True G15621
TU18299 lncRNA downstream 33056 16826059 ~ 16827593 (-) False G15594
TU18297 lncRNA downstream 33056 16826500 ~ 16827593 (-) True G15594
TU18290 lncRNA downstream 62404 16798015 ~ 16798245 (-) True G15589
TU18289 lncRNA downstream 63280 16797034 ~ 16797369 (-) True G15588
TU18382 lncRNA upstream 34255 16906183 ~ 16906414 (-) True G15667
TU18397 lncRNA upstream 47065 16918993 ~ 16920932 (-) True G15682
TU18407 lncRNA upstream 56717 16928645 ~ 16928849 (-) True G15690
TU18413 lncRNA upstream 59713 16931641 ~ 16931859 (-) True G15696
TU18436 lncRNA upstream 60512 16932440 ~ 16932712 (-) True G15718
XM_021566050.2 mRNA downstream 45885 16804630 ~ 16814764 (-) True LOC110492040
XM_036954236.1 mRNA downstream 50830 16804630 ~ 16809819 (-) False LOC110492040
XM_036953979.1 mRNA downstream 134042 16723231 ~ 16726607 (-) False LOC118941412
XM_036954047.1 mRNA downstream 134042 16723231 ~ 16726607 (-) True LOC118941412
XM_036953607.1 mRNA downstream 251822 16605373 ~ 16608827 (-) True LOC118941208
XM_021566587.2 mRNA upstream 12999 16884927 ~ 16904976 (-) False LOC110492327
XM_021566754.2 mRNA upstream 12999 16884927 ~ 16904976 (-) True LOC110492327
XM_036954731.1 mRNA upstream 37274 16909202 ~ 16916433 (-) False LOC110492528
XM_021566956.2 mRNA upstream 37274 16909202 ~ 16916436 (-) True LOC110492528
XM_021567287.2 mRNA upstream 71651 16943579 ~ 16961077 (-) True rab3ab
TU18158 other downstream 329173 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 644353 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1519768 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1677107 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 1678586 15178546 ~ 15182063 (-) False LOC110488330
TU18890 other upstream 259492 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 259793 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 259875 17131803 ~ 17136357 (-) False G16100
TU18952 other upstream 383308 17255236 ~ 17257241 (-) True G16161
TU19906 other upstream 1217952 18089880 ~ 18094938 (-) False LOC110497564

Expression Profile