RNA id: XM_021566464.2


Basic Information

Item Value
RNA id XM_021566464.2
length 2402
RNA type mRNA
GC content 0.43
exon number 13
gene id ddx49
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16875696 ~ 16885634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATAGGAGGAGCTAATATTGACGTCACCAAAATGCGACAGACGTAAAATAACACGAGGATGATCTTCTGGGATTTCAGAGGATAATTTTGAACACTTTGGCTCACAAAACCAAGTATAATATATACTTTTCAATCTGGAATTTTGGAGAACTGCAAAATGTCGGATTTTTCCTCTCTCGGTCTGTCAGATTGGCTGATTCAACAATGTAAACAAATGGGGATCAGTAAACCAACTCAAGTCCAGGAAAACTGTATGCCACCGATTCTGGAAGGTCGGGATTGTATGGGTTGTGCCAAGACTGGCAGTGGAAAGACAGCTGCCTTTGTGCTACCAGTGCTACAGAAATTATCTGAGGACCCATATGGAATCTTCTGTTTAGTTCTCACACCTACCAGGGAATTGGCTTACCAGATTGCTGAACAGTTTAGAGTCCTGGGAAAACCAATGGGCTTGCGGGACTGCATCATTGTTGGTGGAATGGATATGATCACACAGGCCTTGGAGCTCTCTAAGAAGCCACACGTCGTTGTAGCCACTCCAGGAAGACTGGCAGACCACATTCGGAGCTCCGACACATTCAGCATCAAGAAGATCCAGTTTCTGATCCTTGATGAGGCCGACCGCCTGCTTGAGCAAGGCTGCACAGACTTCACCAAAGACTTGGAGGTGATCCTGGCCGCGGTGCCTGTCAAACGCCAGACGCTGCTTTTCAGTGCCACCCTCACAGACACACTACAGGAGCTCAAGGGCATCGCCATGAACAAGCCCTTCTTCTGGGAAAGCAAGTCCGAGGTCCGCACGGTAGAGGAGTTGGATCAAAGGTACATCCTGAcaccagagaaagtgaaagatGCCTACCTAGTGCACCTGATCCAGAAGTTTCAAGATGAGCACGACGACTGGTCGATCATGATCTTCACCAACACCTGCAAAAATTGCCAAATCCTCACAATGATGATGCAGAAATTCAACTTTCCAACCATCTCCTTGCATTCAATGATGAAGCAGAAACAACGTTTCGCCAACCTCGCGAAGTTCAAGTCCAGTGTCTTTAAAATCCTGATTGCAACTGATGTGGCTTCCAGAGGTCTAGATATTCCAACAGTCCAGGTTGTCATCAACCACAACACGCCAGGTCTGCCCAAGATCTACATTCACAGAGTCGGCCGAACTGCCAGAGCAGGAAGGCATGGTGTCTCGATCACACTGGTGACACAGTATGACATCCACTTGGTTCATTCCATTGAGGGACAGATCCAGGCCAAACTGAAAGAATATccagtggaggagaaagaggttCTGAAGATCCTCACTCAAGTCAACGTGGCCAGACGGGAGTGTGAAATTAAACTTGAGTCAACGGATTTTGATGAGAAAAAGGAGATCAACAAGAGAAAACAGATGATTTTGGAGGGGAAAGATCCAGACGTGGAGGCAAAGAGAAAGGCTGAACTGGAGAAGATAAGGAGTGAGAAGAAGTTGTTCAAGGAGAGGATACAGGAAACAATTCAGAAGAAACAACATGGGATGCAGAAGAaactgatgaagcaaaaacacaTTCAAAAGGAAAAGGCAGTGAAGTCCACATAAAGCAACACTGTACATTTATGAATTGTTTCATTGAAATTTCATTTCAACATGTTTTATCTGTACGTTTCCAAATAAATGGCAGTGCATCAACATTTTGCTTTCCAAACCTTTGACAGAAGCAAACTTTATTAATGTTTTACAAGAAAGGACTCAAGGCGAAATGTCTGGAATTAATTTTCACTGCAACTCCATGAATTGCACATATTTTCAAATGCTGGGAAGGAAGGCAGAGATTACTGTACTAAAATATCCTAAAACATGTCAGGAATCAATAGATAATGTCGATCAAACGACTAAGCATGTTTCAACCACGACTAGCTATTTGACAGCATGATTGTCATACAATGTCTTTTGGATTGACAAATTCAAAGTCAAGTGATGACAAACAAAAATTAATGGACATCGGAAGACAAAGCAGGTTGTGAGCTAAAATTAATATTCTCAATTTGGTGCTAAGCacccaaacatttctaaaaactgatAGACAAGGATTTCTAAATACAAAAGTCCCATGGATAGTTTAAAGGACAAATCCACAAAAActattagtccactgttgatacagtcccaaaatgttttgcatgtcatcaTAATGACGTGGAGGTGACACTGATTAAGTCCAATATCTTAACTTTTGGGGCCATCACCAGTtggactaatgaaaaaaataGTTTGTGGCTTTTCCCTTTAGGGATTGATTTAAAACCTAAAAATAAAACCATTATTTCACCACCCTTTGTCATCAGATAACTACTTAGGTCAAATGTTGTCtacaaccccccccctccccacaacacacacacaaaaaaa

Function

GO: NA

KEGG:

id description
K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18338 lncRNA upstream 1444 16874029 ~ 16874252 (+) True G15630
TU18262 lncRNA upstream 19990 16855475 ~ 16855706 (+) True G15564
TU18261 lncRNA upstream 20230 16855185 ~ 16855466 (+) True G15563
TU18250 lncRNA upstream 41520 16833870 ~ 16834176 (+) True G15552
TU18234 lncRNA upstream 78096 16797312 ~ 16797600 (+) True G15538
TU18368 lncRNA downstream 19485 16905119 ~ 16905322 (+) True G15655
TU18387 lncRNA downstream 22536 16908170 ~ 16908425 (+) True G15672
TU18409 lncRNA downstream 44483 16930117 ~ 16930353 (+) True G15692
TU18415 lncRNA downstream 47701 16933335 ~ 16933590 (+) True LOC110492686
TU18418 lncRNA downstream 51902 16937536 ~ 16938307 (+) True G15701
XM_021603690.2 mRNA upstream 48157 16826020 ~ 16827539 (+) False LOC100135798
XM_021611281.2 mRNA upstream 48157 16826124 ~ 16827539 (+) False LOC100135798
NM_001124194.1 mRNA upstream 48157 16826527 ~ 16827539 (+) True LOC100135798
XR_005037653.1 mRNA upstream 124242 16730401 ~ 16751454 (+) True LOC118941434
XM_021565707.2 mRNA upstream 166011 16695732 ~ 16709685 (+) False LOC110491738
XM_021567067.2 mRNA downstream 30848 16916482 ~ 16920945 (+) False LOC110492606
XM_036954805.1 mRNA downstream 30848 16916482 ~ 16920945 (+) False LOC110492606
XM_021567175.2 mRNA downstream 47754 16933388 ~ 16935884 (+) False LOC110492686
XM_021567371.2 mRNA downstream 77363 16962997 ~ 16965857 (+) False LOC110492876
XM_021567385.2 mRNA downstream 91233 16976867 ~ 16980827 (+) False LOC110493012
TU18087 other upstream 294814 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1160014 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1407708 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1913693 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 2063072 14811771 ~ 14812624 (+) True G13434
TU18393 other downstream 30865 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 77423 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 768573 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1090330 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1997089 18882723 ~ 18956208 (+) True G17420

Expression Profile