RNA id: TCONS_00026019


Basic Information

Item Value
RNA id TCONS_00026019
length 2054
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_013104
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49411417 ~ 49447042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTGCAGGAGTGTGTCCTCCATGGAGCGTGtgctgctgctgtgtgtgtgcgtgttctgcgcgtcctcctcctcctccgccaTGCTGTGCCCCAAACGCTGCACCTGCCAGAACCTGCTGCCCTCCTACACCGTGCTCTGCGCCAAAACCGGCCTGCTCTTCGTGCCGCCCAACATCGACCGGCAGACGGCGGAGCTGCGTCTGATGGACAACTTCATCACCAGCCTGCGCCACCGAGACTTCGCCAACATGAGCAGCCTGATCCACCTCACACTCTCCCGAAACACCATCAGCCAGATCCGACCCTACGCATTCGCAGACCTCCAGGATCTACACGCATTGCATCTGGACGCAAACCGGCTGACGGTTCTAGATGACACACACTTACAAGGCCTGGTTAATCTCCGCCATCTAATACTAGCCAACAATCAAATCCACAGCATCTCAGAAGGAGCCTTTCAGGACTTCCTGGAAACTCTTGAAGATCTCGATCTGTCGTATAATAATCTGGTGGACTTACCGTGGGACACCATTGCGATGCTAGCCAGCGTCAACACCTTGAGTTTGGATCATAACCTGATTGAGTTCGTTCCTGAGGGGATATTTTCAAATCTGCATAAACTAGCTAGACTTGATATGACGTCCAATAAGCTGAAGAAGATTCCTCCGGATCCTTTATTTCTGCGTATTCCTGTATACGCCAAGATGAAGGGATCACCGCTGACCGCACTGGTGCTCAGTTTCGGGGGGAATCCGTTGCATTGTAATTGCGAGTTGGTTTGGTTGAGACGTCTTACTCGTGAGGATGATCTGGAGACCTGTGCATCTCCGAGAGAGCTTGCTGGGAAGTATTTCTGGACGATTCGGGAGGAGGAGTTTGTTTGCGAGCCGCCGATGATCACTCGACACACTTCTAAGATGTTTGTGATGGAGGGTCAGGAGGTCAGCCTGCGCTGTCGGTCCGTCGGCGACCCTGAACCCATCGTGCATTGGATCAGTCCTGATGGGAAGCTAATCGCTAACACTTCACGTACAGTATGCTATGATAACGGCTCTCTGGATATCCTGACCGCCACAGTGAAGGATTCTGGCGTGTTTACATGCATCGCTTCTAATGCAGCCGGTGAGGCTACGGCGCCGGTGGAGTTGGTTGTGAATCCTTCACCGCATTATGATCCCAAACTGGAGCCTGAGCCGGGACCCTCGGATATGCCCACGTCTATAAAGTCCAACAGCAGCGGCAGCGGAGGGCAGAATCGAGCTGATCAGCGGGTCACGGTTTCAGAAATTACGCCCAGCTCTGCTATGATCCGCTGGCCTCCACAAAGCCAGATTCCTGGAGTGCGCATGTACCAGGTCCAGTACAACAGCTCCACTGATGACATCCTCATCTACAGaaTGATTCCTGCTTCCCACAAGCGCTTCTTGCTGAGCGATCTGGCCTCGTCCCGTGACTACGAGCTCTGCGTTCTGGCCGTGTATGACGACGGGATCACGTCTCTAACCGCCACACGAATGGTCGGCTGCATATCATTCACCACAGAGCGTGAATTTCGCCACTGCCGCTCCATCCACGATCAATTCCTCGGCGGCACCATGATCATCGTCATCGGCGGCATCATCGTAGCGTCAGTCCTCGTCTTCATCTTTATCCTGCTGATGAAATATAAACTCCACAGCCAGCATTACAAGCAGAAAGCAGCCCGGGTTAGTAATGTTTGCTCCCAGACCAACGGTGGCCAGCAGGGGGCGACATCCGGTCCTCCGCCACGCTCGTCTTCTGGATCCGCTAATAAACCATCCGTCCCGCTGGGGTCCGAAAGACAAGAAGGATCCCATGGAATGGAGGGAGGATACGGGGCTCTGAGAGGAACCACGGTGGTGGACTTAAACCCAGAATATGGGAAATCCGTCAAAGAGGACGACTCCATATCGCAATAACACAGGGCTCGGTCCCACCTCCCTTCCCATTCTCTTCACTCCACACAActtattctgttttgtttttgtttccggCGTCCTGCGGCCTTACTGGGGGTTTTCTCCTGTCCAAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-161017-71 Orthologous to human LRFN3 (leucine rich repeat and fibronectin type III domain containing 3).

Ensembl:

ensembl_id ENSDART00000028944

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026018 lncRNA upstream 51632 49282063 ~ 49359785 (+) False XLOC_013102
TCONS_00027189 lncRNA upstream 51667 49285561 ~ 49359750 (+) False XLOC_013102
TCONS_00027190 lncRNA upstream 51667 49324933 ~ 49359750 (+) False XLOC_013102
TCONS_00027191 lncRNA upstream 52063 49324946 ~ 49359354 (+) True XLOC_013102
TCONS_00027192 lncRNA upstream 53932 49356457 ~ 49357485 (+) False XLOC_013103
TCONS_00027194 lncRNA downstream 477169 49906024 ~ 49913858 (+) True XLOC_013105
TCONS_00026943 lncRNA downstream 575879 50004734 ~ 50005794 (+) True XLOC_013107
TCONS_00027195 lncRNA downstream 615461 50044316 ~ 50046147 (+) True XLOC_013108
TCONS_00026023 lncRNA downstream 661786 50090641 ~ 50091268 (+) True XLOC_013109
TCONS_00026944 lncRNA downstream 698634 50127489 ~ 50127777 (+) True XLOC_013110
TCONS_00026015 mRNA upstream 143561 49248389 ~ 49267856 (+) False XLOC_013101
TCONS_00026017 mRNA upstream 146567 49248452 ~ 49264850 (+) True XLOC_013101
TCONS_00026016 mRNA upstream 152161 49248434 ~ 49259256 (+) False XLOC_013101
TCONS_00026014 mRNA upstream 163938 49225552 ~ 49247479 (+) True XLOC_013100
TCONS_00026011 mRNA upstream 438741 48953963 ~ 48972676 (+) True XLOC_013097
TCONS_00026021 mRNA downstream 540713 49969568 ~ 50040161 (+) True XLOC_013106
TCONS_00026022 mRNA downstream 660145 50089000 ~ 50100149 (+) False XLOC_013109
TCONS_00026024 mRNA downstream 847078 50275933 ~ 50356788 (+) False XLOC_013111
TCONS_00026025 mRNA downstream 847482 50276337 ~ 50356788 (+) False XLOC_013111
TCONS_00026026 mRNA downstream 847798 50276653 ~ 50356662 (+) False XLOC_013111
TCONS_00026002 other upstream 858209 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026000 other upstream 972804 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00025985 other upstream 2834278 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00025947 other upstream 3836239 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025943 other upstream 4152320 45258981 ~ 45259097 (+) True XLOC_013050

Expression Profile

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