RNA id: XM_036955739.1


Basic Information

Item Value
RNA id XM_036955739.1
length 3165
RNA type mRNA
GC content 0.46
exon number 3
gene id klhl26
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17263953 ~ 17272050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCAAAGTGATTGAAATGACCGGTATTGTAATCTCAGCGCATCCTAGCGGTGAACAGCAGCAGCGCATGGGCTCAGCACAAACCCGACAAACTGAAGTCGAACACAGCGCACGACAGGACATTTCCATCTGGTGCAGAGCACGGTGCTAGAAGATGGCGGAGTCAGATGGTGGGGATTTCGCCTCGAATCGTCCACAGAACAGAGCCATGTTCACTGGAGGCATGAGGGAGTCAAACCAGGAAACCATTGAGCTGAAGGGCTTGTCTGCCCGTGGCCTGAAACACATAATTGACTTTGCCTACAGCGCAGAGGTCACGCTTGACCTGGACTGCATTCAAGACGTACTGGGAGCAGCAGTCTTTCTACAGATGGTCCCAGTCGTTGACCTTTGCGAAGAATTCCTCAAGTCAGCTATGAGCGTAGAGACCTGCCTGAACATCGGCCAGATGGCCACCACCTTCAACCTGACCTCCCTCAAGGAGTCTGTGGACACCTTCACCTTCCGCCACTTCCTGCAGATTGCAGAGGAGGAAGACTTCCTGCACATCCCCATGGAGCGCCTGGTCTTCTTCCTACAGAGCAACAAGCTGAAGAACTGCAGCGAGATTGACCTGTTCCACGCTGCCATCCGCTGGCTGCAGCACGATGAGGCCCGCCGAGCCGGTGTAAACGAGGTCCTCTGCCACGTGCGATTCCCCCTCATGCCCTCCTCGGAGCTGGTGGACAGCGTGCAGACGGTGGACATCATGGTGGAGGACGTGTTGTGCAGGCAGTACCTCCTGGAGGCCTTCAACTACCAGATCCTCCCGTTCCGTCAACACAAGATGCAGTCCCCGCGGACTGTGATCCGCTCCAACGTGGTTTCGCTAATTACCTTTGGCGGGACACCCTACACTGACAACGATCGCACTGTGAGCAGTAAGGTGTTCTATCTCCCAGACATTGCAGCGCGTCAGTTCAAGGAACTAACGGAGATGGAGACAGGATCCAGCCACGCCTGTGTATCAGTGCTGGACAACTTTGTGTACGTAGTCGGCGGGCAGCACCTGCAATACCGCAGCGGTGAAGGGGCAGTGGACATCTGCTTCCGTTATGACCCACACCTGAGCAAATGGCTGCGTATCCAGCCAATGCAGGAGGGGCGTATTCAGTTCCACCTCAACGCTCTTCAAGGACAACTCTACGCCACTGGGGGGCGCAACCGATCTGGAAGTCTGTCGTCCGTAGAGTGCTACTGTCCTAAGAAAAACGAGTGGACCTACGTGGAACCACTAAAACGCAGAATCTGGGGCCATGCAGGAACTCCCTGTGGCGACAAGCTCTACATCTCAGGGGGTTACGGTGTCTCAGTGGATGATAAGAAAACCCTGCACTGTTACGACCCCACGTCTGACCAATGGGATTTCAAATCGCCTATGAACGAGCCCAGAGTGCTTCATGCTATGATCAGTGCCAAAGACCGTGTTTACTGCCTGGGCGGTCGCATGGACCATGTGGATCGCTGCTTTGATGTCCTAGCAGTTGAGTATTATATTCCAGAGAATGACCAGTGGACCACTGTTAGCCCCATGCGAACAGGGCAATCTGAGGCAGGCTGCTGCTTGTTGGATAAAAAGATCTATATCGTTGGAGGGTACAATTGGCATCTAAATAATGTCACAAGCATTGTGCAAGTGTACAACACAGAGACTGATGAGTGGGAGAGGGATTTGCACTTTCCTGAGTCTTTTGCAGGAATTGCGTGTACGCCGATCATACTTCCACAAACCACCACGCAACGGTAATCCTTCGGCCAAAAGAGACAGACAATTTGATTCCATGCATTCTTACTGTTGAGCTGTCAAATTAATACAAACATGGCACATTACATAAACTATTGAAATATTAGTGGTCATTTTGATGtaatgtgggtgggtgtgtgtgtttgagggaaTAAGTGGAAATAGGAATACTATTTTGCTATAATATACAGTGTATTACTTCATTTTCCATCCTATGGTTGAGGTCCATGTGCTACATTGTAATGAGCAGTTTTAATGGAAAATAAGTGTTAGCTTTCTGGGACAAACTCGCTTTTAGGGTATTTTAAGCAACACTTAAAACACTACCCACAGTCAACCTATTAACTGATTTGCAGGATAGTTTTTAAATTTGTGCCATGCATCAAGGAAGCATgttttgattatttaattgaGTATATTCATTCAAATaataaaagaaaatgtaaaaaaaaaaatgttttacaacaTATGGGATGACATATTTGACTGTTTAGGACCATTTGAGAACTAGTGATTGACTTAAGAAGACTCTCCTAATGTTTTATGTTTATTTCAGAACATCTGTTTTTGCTGTGTATGGTGATGTGCTCATTAGGCCGTTCAATTGACTGGAGACGTTTGCACACAGTCATCATAATGAAATGTGTATTCCAAACTGACAAGCTAATATGTCTCTTATGGCACCGTAATCATTTTTTTCAACTCCTTTGTGTAAGTGTGTGAGAACAGCTGTGTTTAGTGCTCCTTTGGTAGGTATATCAGATATATTTTGGTGCCACGTTCTTTATCCAAGCTCCTACATAAAAGGACAACATCAGTGTGAGCACTATGGTAATGAATTTTACCTAGACAAGCGTACTGCTTTCACTTATCCAGTCCTGACAGAACTGTGAATCTCAAAGAGCTGGTCGCAAGGGGCTGAACTTGAAGTAAGGGTCAAAGTAAAGGCATAGATGGAAAGAACAGCACAGCACACAAGCAGTGAAATGTGATTATTTTCCCTAGTGTATTTCTTATTTTAGTACTGTGCAGATGGTAGCATTTTTGTTTTGAGGAGTAGCCTATTTGTGAGGATTTCAGTATTGTATGCAAAACTGATATGGCTTTTACTGATTTTAGACTGTTGGCAATGCTGAGACGAGCTGAATTTTATTTGGAAGCACAACATGGCACTCGTTGAAAAATGTTTGGTTCTGAAAATGTCACCTGTTTGCCTTAGGAACAGGTTTTTTGTGATGTTTTGTCTGTCCAACTCAGAAGCACATAGTTATCTATTAAGTGCATTATAAGTGGAATTCACTGTAATCCAATGAGAATGTAGACTTTTCTGTATCCAAATGTATAACTTTTAATTAAAGGTGTTACGTGAACTGAAAAAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18610 lncRNA upstream 6126 17257428 ~ 17257827 (+) True G15865
TU18638 lncRNA upstream 23336 17240391 ~ 17240617 (+) True G15891
TU18473 lncRNA upstream 127583 17134140 ~ 17136370 (+) True LOC110493316
TU18462 lncRNA upstream 290585 16973141 ~ 16973368 (+) True G15743
TU18435 lncRNA upstream 293730 16969905 ~ 16970223 (+) True G15717
TU18649 lncRNA downstream 37835 17309885 ~ 17313925 (+) True LOC110494078
TU18676 lncRNA downstream 42516 17314566 ~ 17314970 (+) True G15928
TU18648 lncRNA downstream 72522 17344572 ~ 17347869 (+) True smim7
TU18651 lncRNA downstream 83645 17355695 ~ 17356974 (+) True LOC110494277
TU18656 lncRNA downstream 85651 17357701 ~ 17358053 (+) True G15909
XM_021568167.2 mRNA upstream 7693 17244353 ~ 17256260 (+) True LOC110493709
XM_036955227.1 mRNA upstream 127588 16982509 ~ 17136365 (+) False LOC110493316
XM_036955861.1 mRNA downstream 1550 17273600 ~ 17313926 (+) False LOC110494078
XM_021569453.2 mRNA downstream 72332 17344382 ~ 17347870 (+) False smim7
XM_021569255.2 mRNA downstream 76398 17348448 ~ 17356979 (+) False LOC110494277
XM_021569333.2 mRNA downstream 76398 17348448 ~ 17356979 (+) False LOC110494277
XM_036956096.1 mRNA downstream 80532 17352582 ~ 17356979 (+) False LOC110494277
TU18429 other upstream 296163 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 343544 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 683071 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1548271 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1795965 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 382157 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 703914 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1610673 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2292799 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2296735 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile