RNA id: XM_036955861.1


Basic Information

Item Value
RNA id XM_036955861.1
length 6443
RNA type mRNA
GC content 0.40
exon number 13
gene id LOC110494078
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17273600 ~ 17313926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAGCGTTGTGCGTAAGGTCCCATTGAGAAGAAGAGCAGAAGATGGCGAGTTCAAACAATCCACGTAAATTTAGCGAGAAAATCGCTTTACATAATCAGAAACAGGCCGAAGAGACTGCGGCTTTCGAAGAGGTGATGAAAGACCTAAACATTACTAGAGCTGCACGGTTGCAGTTACAGAAGACCCAGTATTTGCAACTAGGGCAGAATCGTGGACAGTACTATGGAGGCTCACTGCCCAATGTCAATCAGATTGGAAATAGCAACATTGACCTGCCTTTTCAGAATTCCACCTTGGACAGCAGTCGGTCGACCAGGCATCACGGACTGGTAGACCGCGTTTACCGTGATCGGAACCGAATCACCTCCCCGAACCGCCGGCCCCTCTCTGTGGACAAACATGGCCGCCAGATTGACAGCTGCCCCTATGGCTCAGTGTACCTCTCACCCCCACCGGATACCAGTTGGAGGAGGACGAACTCCGACTCAGCCCTACACCAGAGTGCCATGAACCCAGTGCCCCAGGACTCATTTACAGGGGGTTCACAAGAGCTCCAGCCTAAACAAGTGCTGCTGCTTACAGTTCCTGGGACTGAGGAGTCTGAATCACACGCAGACAAGGATACACAGTGGGGTAACAAAAAGAATGACTCAAGACCCAAGTCTTGTGAAGTCCCCGGGATCAATATATTTCCATCACCTGATCAGGAAGTGAACACGTCATTGATCCCGGCCACGCTCAACACAGGAGGCTCCCTGCCCGATCTGACCAACATCCAGTTCCCCCCACCACTGCCCACTCCGCTGGACCTGGGCGAAACTTTGGTGTTTCCGTCCCTTAGCACCTCCAACAGCACGGGCAACCTGACAACCAACCTCACCCTCCTAGGCATCAGTGCTGCCAGCCACGGGATCCCAACCACCGCTCAGCCTACCGTGACGGCCCAGCGCAGGCAGTCCACCCTggtccccctaaccctaaacgccAACCCACAGCAGTCACCGCAGCAGCTCTCCCCCACCCTATCGCCCCCCCTCAACATCCAGGCAATGGCGATGGAcgccttgactctggagcagcagcTATCCCAGTACGCCTTCTTTAGCCAGCTGACAGCGCAGTCCCAGGCCCAAGTGCTCAATGACCTGCAGCAGCAAGCCCTGCCCCAGGGCATCAGGCTAATTACCCTGGCCACCACCACTGCCTCCACAGTCACCCAGTCCTCCCCAGTCAGCCAGATCGCGACGACTGTCAACATCAACTCGCACATTCCAGTGGTGGGCAGTATATTTGGGGATTCTTTCTACGACCAGCAGCTAGCATCAAGGCAGACCAATGCTCTCTCCCATCAGCTCGAACAGTTCAATATGATTGAGAACCCGATCAGCTCCAATAGCCTGTACAGCCAGTGCTCCACCCTCAACTACACACAAGCAGCTATGATGGGCCTCACAGGGAGCAGTCTGCACCAGTCCCAGCCGTTGGGCTACGGTAGCCATGGCAACATCCCAAACATCATCCTCACAGTGACAGGCGAGTCTCCACCCAGCCTCTCTAAGGAGTTAACCAACTCACTGGCCGGCGTCGGAGATGTCAGCTTCGACGCGGACTCTCCGTTCCCATTGGACGAGCTGAAGATCGACCCCCTCACCCTGGACGGACTGCACATGCTCAATGACCCCGACATGGTTCTGGCCGACACTGCCACTGAGGACACGTTCAGGATGGATAGGCTGTAATACAGAATGCTGTCAGTGGCCAACGACAAAAAAGAACCCTAGGAAGAAAGGGAAACCAGGCATGGCCATTCAGCTATTCAACCTCGCACTCACCCTCAAGTCCTTTGAAATGATGAGCCACCAAAACCCATTGTGGAGAAGGACATGCAAAGACTTGTTAAGGTCAGGAATGGAATTGTTGTAATTTCCAATGAGATTGTTGGTTAGTGCTTTGCTAGCTTGCTGCGTTAACTATCTCTAATTTCTTACCATATATCCCACAGTGTTACACTTGATAAAAGATTGTATATCTcctttttatttagttttttatttttctacAAATCTACATGCATTTAAAAAGCGAAAAGCCACTAGGAAGGTGAGCTGCACCATAACTATTATAATTCCTTACCAACCATATACGCTTTATACTTCACACTCAAAGCTTTATTTTTATTGACAACCAAATGTTAATGTTTGCGTTATGCGTATgatggatttttatttatttaaatatttatTACTTCAgttgaatgtttttttgttgcatttcaaAATGTGTGAGTTTGAAGCCAATGTCTCTGCTCTAACTGTATTGTGCAAACTACATTGATTATGGATCTATTCATTTAAGTTACATATTTATGTATTAAGCTGCTCTGTTAAACTTAAGGAGCACAAATCCTCCCCATGTTTGCTCTTACGGTTGCCGGTTGCAACGACATCTCACTAGATATAATCAGATAAGGCCTCTTAAAATATAGGGTAGGATCTGCAATTGTGTTTTCATCACTTACATGGGCCCGCAATCGTTGGGTTTCATCTTGTGCCAATGCTGTTTTTAAATGTATCTTAACTAATGAAAAACATATTCAACAGATGCTTATAAGCTTAAGCAAATGTGACAATGTAAACATGGAAAATGCAAATACCCAAACTAGATGGCCATAATTCTCCTTTGCATGTATATCCAGATTGAATGCCTCCTGAAAATCTGAAGGATACAAACTCCTCAGAAACCTGTTGAACTTGTCACTGTGAGATCACCTGATTTTGCCTTACATATTGAGTATTGTACTGTTTTTAAGTGTAACTAATGTGACAGTGTATTTTCTTAACTTCTAACATTTTCTTGTATTTGAGAGGAATTTTAAATCCTAGTCAGTGACAATATTTGTGGTTATGTAGTGTAAAGTTTGACAAATCACTGTACTGTATTTTGTACTGGTACACTTTCTAAATGAGTTATGggtgttttgtaaaaaaaaaaaaaaaaggaaatgttGATTTCAAATTTGTGATGGAGAGTGCAAATATGGGGAGGCTTTCTTCTCCTTAAAGGGAAACTTACAAacacaaatacaattattttggTAGACAATTGTTATGATAAAAAAACAATGTTACTTAGAATTCATATTTGGTTCTTCCCTCCAGATTAGGGTCTGGTAGAAAActatttgaaccattccattttaTGCTCATAGCTAAATGAGTCCCACAACACATGTAGAACTTTGCAAAAGAGGTTAAAATGGGCAGAGTTTTCGTCTATACGCTAACTTGTAGAGCTGAAATACTTAAACTTTTTATTTTACTCTATCTTCCCCTCTGTTTCATATTCTGACATTTCCGTTTTGAAAACTAATATAGCGAGATGGAAGTAAGTGAAGAGCAACTTGGCTAAATAGGATGTTTCCTTATATGGGCTGAGAATGTGTCAACCATTTAGTGTCAAGTGTCAACCATTTATAAAGAAcacaatattacatttttttgtttttctcttaacatttgacatttttatacGGTAGCTATGTTTGATCATGtttctactgtactgtgtgtgtgtatatacagaaAATGTTAATGTTACTTTTTAACTAAATCCCAATGTGGGAAGAGGCATAGTTCGCCAACTATGAGTTAATGATAAgtacaaatatatatttgagaAATAATATTTGATTCTTACGCAAATCGGAAATGAGAAATCATACcattgcatcactagaatatgTAGAAATGCACCGTTCTACAAAAAACTGTTTAAGCCAAACTGCAATACTCCAGTATGCTACTTTCTTACAGTGCCATCCAGATTAATTCGCTGCAAattatttttattcatttttgtttCTGAACATTTTCCAAAATGTGCATTCTGATATCCTGTACATAGGCTATAGCTGAAACAAAATGACCGCATGACAAAAATGGAAGTGACCCTCAGAAAAAGGCCTTCAAATCAAGTATTTGgtcacacatatttagcagatgttattgcgggtgtagcgaaatgctcatTTTCTATACAGTATTGATTTAAATTGAGCTCTACAATGTAGTAAAAACAGAAAACACCACATAAAAAATTATGCATGTGTCAGTTGTTCCTAATGATTCATGTAAATGGTTACTTTTCAGATGACTGTGTTGCCTCCATTTATGCATAATGCTAGCGCATTGCTGAAATAGGAATGTATTTGTTTACGGTCTTGGAATGTCTGTTTCAACAAATGACATAAGTCAAAAGCATTTTTCTTGAATATCTCTTACTACCATCCATTTGTTGTTCAATTGAATTGGCTGTTAATTGCTTTTGAACCTAGTTCTTCACTGTAGCACTTCACTGTGGGTTTTAAATAGTTGTTCCTGTAAGGCGAACCTATTATGAATCCCATCTTCATAACAGACATTTTTTAAAGTGGTAGTTCACTCCAAAGATCGAAGATTTCAGCTCtcatagttgtctaatgttgagaTGAAACCATTTCAAAAAGAGGGTTGAGTTAAGGAGCCAACTTCTTTCAAATTCTTAATCAACTTTGAATTTCCTGATGCAGAAAAAGTTTTCTAGCCTAATCAGAAACCGGCTTAATTGCAGGATAACCCATATCTTGAACGTGGAAATTCACATTGCGTTCTCCtcaaataatcaaatcaaaacGATGGATGTGGATAAAAGCCAAATAGTTGATGTGATTTATAGCATGCATGTTGTAATTAGTTTGATGCAACTTTTTGTCTTCAAATGACCACCCAAATTACTGAGCTACAAGTGTGAACTGAAAGGGAAAAATGATGGAATCAGATGTTGTGCATCTTTTCCATTCCTTTAAGACTGAGGCATACACTGAATAGCTGGAGCTACAGAACATTAGGCTTGGGCCATGGACTCCCCTTGACATTAGACCACAATATAACATCTTTGGAGAAATTTAGATTTTGGAGTGAACTGTCACTTTACTGGCCTGGCAAGAGTGAAAACAAAAACAGTTTCACTAAATATGTCGCTTACAGTAGCGGTCAAACTTGCCACTGTTTACGATCTTTAAAAAATAAGTTGAAATTGGAAAAACTATTGGTTTTCAAGTGTATTTGTTTGAtttacaaccacatgaccaagaGAGAAAATGAAATTGAGACTTTTAACTTAAGTCAAAAAATTGGTGGACTGAATTATTCAAAATTCAAATGAATTTGGTTGGAGGCAAGTGATTTCTCTTTTACTGTGTCATTTTTCACCTGTGGTAAGTTGCAGGTGCCTACAgggtaaaaaataaacattcaaaCCATTTTGAAAAGAGAACATTCTGCTCCATTGCACTCAATTGTAAAGTGCCTATATATTTGACTGTACTCTATTTGCAGTAAAATTTGACTGTCAAGAGAGCTTACTGTCAGTTGCATGACATGACAGATGTTATAAGTAGTCCCTACTGCTGATACGGGTTTATTGAAAATGATTCAGCACTATCATGTTAACTTCAGCAGTATGTGTATGAcctatggctagctagctaacataaattGAGGCATGTTTTGAAATCAATTCTAAACACATATCAGTTACTGTGACTGCATACAGTAAGACATATTCTATGTAAGGTTTAACAAACATGTTTGTATTGTATGTGTTCGTTCTTATTCTGTTGCTTTCTCACTTTAGTTATGGTCACCTGCCTTGTGAACAGTGACTGTTCTGTCAATGCTGACTGTTTTACCCCAAGTTTGAAGAAAGCGTATATTCTTTTATTTTTGTAAAGCCGGTCATTTTAAATGTGACTTGCATCTATATTCCTTATTTTGGGATGCAAAACCAGAAAGGGCTTATTCCAATGCAGCTTGTTTTCCCAACatgttaaaaaaaagaaatagcACTCGATGTATTGTCGATCAATATACCATACTGCTCTGCATATGCATGGGAAGTGGAAATCTAATAAGGTGATGTGGACTCCTGTGTTGACAGTAGTAATTGAAATCAACTGACTGAAGTGAGAATGTTATCTTGATTCTCACTAAGTATACTGTCACTGCCTGAGGACCTGTCACCACAAATTCCCTCAACTAATAAGGTAAACATTGAGCAATTGCAAAGGAACTTAATCTCAAGTCAATTGTTACCCATACTTTAAATGCATTAGTATGAATCCATATAATTGCCTCCTCTAGGACCGTTGATGTTGGAAAACCTAAAATGACACTTTTGGAAAGTATTTCCAGTTAGTAATGTAAAGAAAATCTCTTCTTGGTCATCTTTAAGTGGATATCACATATTTAACCATTGTCCTGTAAATCATATTCTGAgatgtatttttttgttgctatGTGAAACTACGTATGTGGCCCATTTGTAAGATGAAACTTGAATGTGGGTGGCATCTTTTTCCTGTACATagtctcaatatcaaataaaatTCATTTTCACCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18610 lncRNA upstream 15773 17257428 ~ 17257827 (+) True G15865
TU18638 lncRNA upstream 32983 17240391 ~ 17240617 (+) True G15891
TU18473 lncRNA upstream 137230 17134140 ~ 17136370 (+) True LOC110493316
TU18462 lncRNA upstream 300232 16973141 ~ 16973368 (+) True G15743
TU18435 lncRNA upstream 303377 16969905 ~ 16970223 (+) True G15717
TU18676 lncRNA downstream 640 17314566 ~ 17314970 (+) True G15928
TU18648 lncRNA downstream 30646 17344572 ~ 17347869 (+) True smim7
TU18651 lncRNA downstream 41769 17355695 ~ 17356974 (+) True LOC110494277
TU18656 lncRNA downstream 43775 17357701 ~ 17358053 (+) True G15909
TU18694 lncRNA downstream 45243 17359169 ~ 17360057 (+) False G15942
XM_036955739.1 mRNA upstream 1550 17263953 ~ 17272050 (+) False klhl26
XM_021568458.2 mRNA upstream 1550 17263955 ~ 17272050 (+) False klhl26
XM_036955709.1 mRNA upstream 1550 17263984 ~ 17272050 (+) False klhl26
XM_021568373.2 mRNA upstream 1550 17263985 ~ 17272050 (+) False klhl26
XM_036955667.1 mRNA upstream 1550 17263986 ~ 17272050 (+) False klhl26
XM_021569453.2 mRNA downstream 30456 17344382 ~ 17347870 (+) False smim7
XM_021569255.2 mRNA downstream 34522 17348448 ~ 17356979 (+) False LOC110494277
XM_021569333.2 mRNA downstream 34522 17348448 ~ 17356979 (+) False LOC110494277
XM_036956096.1 mRNA downstream 38656 17352582 ~ 17356979 (+) False LOC110494277
XM_021569587.2 mRNA downstream 53123 17367049 ~ 17384408 (+) True slc35e1
TU18429 other upstream 305810 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 353191 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 692718 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1557918 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1805612 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 340281 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 662038 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1568797 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2250923 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2254859 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile