RNA id: TU18649


Basic Information

Item Value
RNA id TU18649
length 4041
lncRNA type sense_over
GC content 0.37
exon number 1
gene id LOC110494078
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17273600 ~ 17313926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAATCCTCCCCATGTTTGCTCTTACGGTTGCCGGTTGCAACGACATCTCACTAGATATAATCAGATAAGGCCTCTTAAAATATAGGGTAGGATCTGCAATTGTGTTTTCATCACTTACATGGGCCCGCAATCGTTGGGTTTCATCTTGTGCCAATGCTGTTTTTAAATGTATCTTAACTAATGAAAAACATATTCAACAGATGCTTATAAGCTTAAGCAAATGTGACAATGTAAACATGGAAAATGCAAATACCCAAACTAGATGGCCATAATTCTCCTTTGCATGTATATCCAGATTGAATGCCTCCTGAAAATCTGAAGGATACAAACTCCTCAGAAACCTGTTGAACTTGTCACTGTGAGATCACCTGATTTTGCCTTACATATTGAGTATTGTACTGTTTTTAAGTGTAACTAATGTGACAGTGTATTTTCTTAACTTCTAACATTTTCTTGTATTTGAGAGGAATTTTAAATCCTAGTCAGTGACAATATTTGTGGTTATGTAGTGTAAAGTTTGACAAATCACTGTACTGTATTTTGTACTGGTACACTTTCTAAATGAGTTATGggtgttttgtaaaaaaaaaaaaaaaaggaaatgttGATTTCAAATTTGTGATGGAGAGTGCAAATATGGGGAGGCTTTCTTCTCCTTAAAGGGAAACTTACAAacacaaatacaattattttggTAGACAATTGTTATGATAAAAAAACAATGTTACTTAGAATTCATATTTGGTTCTTCCCTCCAGATTAGGGTCTGGTAGAAAActatttgaaccattccattttaTGCTCATAGCTAAATGAGTCCCACAACACATGTAGAACTTTGCAAAAGAGGTTAAAATGGGCAGAGTTTTCGTCTATACGCTAACTTGTAGAGCTGAAATACTTAAACTTTTTATTTTACTCTATCTTCCCCTCTGTTTCATATTCTGACATTTCCGTTTTGAAAACTAATATAGCGAGATGGAAGTAAGTGAAGAGCAACTTGGCTAAATAGGATGTTTCCTTATATGGGCTGAGAATGTGTCAACCATTTAGTGTCAAGTGTCAACCATTTATAAAGAAcacaatattacatttttttgtttttctcttaacatttgacatttttatacGGTAGCTATGTTTGATCATGtttctactgtactgtgtgtgtgtatatacagaaAATGTTAATGTTACTTTTTAACTAAATCCCAATGTGGGAAGAGGCATAGTTCGCCAACTATGAGTTAATGATAAgtacaaatatatatttgagaAATAATATTTGATTCTTACGCAAATCGGAAATGAGAAATCATACcattgcatcactagaatatgTAGAAATGCACCGTTCTACAAAAAACTGTTTAAGCCAAACTGCAATACTCCAGTATGCTACTTTCTTACAGTGCCATCCAGATTAATTCGCTGCAAattatttttattcatttttgtttCTGAACATTTTCCAAAATGTGCATTCTGATATCCTGTACATAGGCTATAGCTGAAACAAAATGACCGCATGACAAAAATGGAAGTGACCCTCAGAAAAAGGCCTTCAAATCAAGTATTTGgtcacacatatttagcagatgttattgcgggtgtagcgaaatgctcatTTTCTATACAGTATTGATTTAAATTGAGCTCTACAATGTAGTAAAAACAGAAAACACCACATAAAAAATTATGCATGTGTCAGTTGTTCCTAATGATTCATGTAAATGGTTACTTTTCAGATGACTGTGTTGCCTCCATTTATGCATAATGCTAGCGCATTGCTGAAATAGGAATGTATTTGTTTACGGTCTTGGAATGTCTGTTTCAACAAATGACATAAGTCAAAAGCATTTTTCTTGAATATCTCTTACTACCATCCATTTGTTGTTCAATTGAATTGGCTGTTAATTGCTTTTGAACCTAGTTCTTCACTGTAGCACTTCACTGTGGGTTTTAAATAGTTGTTCCTGTAAGGCGAACCTATTATGAATCCCATCTTCATAACAGACATTTTTTAAAGTGGTAGTTCACTCCAAAGATCGAAGATTTCAGCTCtcatagttgtctaatgttgagaTGAAACCATTTCAAAAAGAGGGTTGAGTTAAGGAGCCAACTTCTTTCAAATTCTTAATCAACTTTGAATTTCCTGATGCAGAAAAAGTTTTCTAGCCTAATCAGAAACCGGCTTAATTGCAGGATAACCCATATCTTGAACGTGGAAATTCACATTGCGTTCTCCtcaaataatcaaatcaaaacGATGGATGTGGATAAAAGCCAAATAGTTGATGTGATTTATAGCATGCATGTTGTAATTAGTTTGATGCAACTTTTTGTCTTCAAATGACCACCCAAATTACTGAGCTACAAGTGTGAACTGAAAGGGAAAAATGATGGAATCAGATGTTGTGCATCTTTTCCATTCCTTTAAGACTGAGGCATACACTGAATAGCTGGAGCTACAGAACATTAGGCTTGGGCCATGGACTCCCCTTGACATTAGACCACAATATAACATCTTTGGAGAAATTTAGATTTTGGAGTGAACTGTCACTTTACTGGCCTGGCAAGAGTGAAAACAAAAACAGTTTCACTAAATATGTCGCTTACAGTAGCGGTCAAACTTGCCACTGTTTACGATCTTTAAAAAATAAGTTGAAATTGGAAAAACTATTGGTTTTCAAGTGTATTTGTTTGAtttacaaccacatgaccaagaGAGAAAATGAAATTGAGACTTTTAACTTAAGTCAAAAAATTGGTGGACTGAATTATTCAAAATTCAAATGAATTTGGTTGGAGGCAAGTGATTTCTCTTTTACTGTGTCATTTTTCACCTGTGGTAAGTTGCAGGTGCCTACAgggtaaaaaataaacattcaaaCCATTTTGAAAAGAGAACATTCTGCTCCATTGCACTCAATTGTAAAGTGCCTATATATTTGACTGTACTCTATTTGCAGTAAAATTTGACTGTCAAGAGAGCTTACTGTCAGTTGCATGACATGACAGATGTTATAAGTAGTCCCTACTGCTGATACGGGTTTATTGAAAATGATTCAGCACTATCATGTTAACTTCAGCAGTATGTGTATGAcctatggctagctagctaacataaattGAGGCATGTTTTGAAATCAATTCTAAACACATATCAGTTACTGTGACTGCATACAGTAAGACATATTCTATGTAAGGTTTAACAAACATGTTTGTATTGTATGTGTTCGTTCTTATTCTGTTGCTTTCTCACTTTAGTTATGGTCACCTGCCTTGTGAACAGTGACTGTTCTGTCAATGCTGACTGTTTTACCCCAAGTTTGAAGAAAGCGTATATTCTTTTATTTTTGTAAAGCCGGTCATTTTAAATGTGACTTGCATCTATATTCCTTATTTTGGGATGCAAAACCAGAAAGGGCTTATTCCAATGCAGCTTGTTTTCCCAACatgttaaaaaaaagaaatagcACTCGATGTATTGTCGATCAATATACCATACTGCTCTGCATATGCATGGGAAGTGGAAATCTAATAAGGTGATGTGGACTCCTGTGTTGACAGTAGTAATTGAAATCAACTGACTGAAGTGAGAATGTTATCTTGATTCTCACTAAGTATACTGTCACTGCCTGAGGACCTGTCACCACAAATTCCCTCAACTAATAAGGTAAACATTGAGCAATTGCAAAGGAACTTAATCTCAAGTCAATTGTTACCCATACTTTAAATGCATTAGTATGAATCCATATAATTGCCTCCTCTAGGACCGTTGATGTTGGAAAACCTAAAATGACACTTTTGGAAAGTATTTCCAGTTAGTAATGTAAAGAAAATCTCTTCTTGGTCATCTTTAAGTGGATATCACATATTTAACCATTGTCCTGTAAATCATATTCTGAgatgtatttttttgttgctatGTGAAACTACGTATGTGGCCCATTTGTAAGATGAAACTTGAATGTGGGTGGCATCTTTTTCCTGTACATagtctcaatatcaaataaaatTCATTTTCACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18610 lncRNA upstream 52058 17257428 ~ 17257827 (+) True G15865
TU18638 lncRNA upstream 69268 17240391 ~ 17240617 (+) True G15891
TU18473 lncRNA upstream 173515 17134140 ~ 17136370 (+) True LOC110493316
TU18462 lncRNA upstream 336517 16973141 ~ 16973368 (+) True G15743
TU18435 lncRNA upstream 339662 16969905 ~ 16970223 (+) True G15717
TU18676 lncRNA downstream 641 17314566 ~ 17314970 (+) True G15928
TU18648 lncRNA downstream 30647 17344572 ~ 17347869 (+) True smim7
TU18651 lncRNA downstream 41770 17355695 ~ 17356974 (+) True LOC110494277
TU18656 lncRNA downstream 43776 17357701 ~ 17358053 (+) True G15909
TU18694 lncRNA downstream 45244 17359169 ~ 17360057 (+) False G15942
XM_036955739.1 mRNA upstream 37835 17263953 ~ 17272050 (+) False klhl26
XM_021568458.2 mRNA upstream 37835 17263955 ~ 17272050 (+) False klhl26
XM_036955709.1 mRNA upstream 37835 17263984 ~ 17272050 (+) False klhl26
XM_021568373.2 mRNA upstream 37835 17263985 ~ 17272050 (+) False klhl26
XM_036955667.1 mRNA upstream 37835 17263986 ~ 17272050 (+) False klhl26
XM_021569453.2 mRNA downstream 30457 17344382 ~ 17347870 (+) False smim7
XM_021569255.2 mRNA downstream 34523 17348448 ~ 17356979 (+) False LOC110494277
XM_021569333.2 mRNA downstream 34523 17348448 ~ 17356979 (+) False LOC110494277
XM_036956096.1 mRNA downstream 38657 17352582 ~ 17356979 (+) False LOC110494277
XM_021569587.2 mRNA downstream 53124 17367049 ~ 17384408 (+) True slc35e1
TU18429 other upstream 342095 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 389476 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 729003 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1594203 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1841897 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 340282 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 662039 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1568798 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2250924 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2254860 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile