RNA id: XM_021569453.2



Basic Information


Item Value
RNA id XM_021569453.2
length 996
RNA type mRNA
GC content 0.37
exon number 5
gene id smim7
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17344382 ~ 17347870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctggtctaggtcttaaatgaaagaagaaaaaaaacctaggccctccatggaatgagtttgacacccctgcccaaCGTGATTGATCATATTTCTAATGTGGCTTTCTCTTCAAAACGTTTTCTCTACTGAACATAACCCAGGATTTCCCTTCAGCCTTTTGACACTATTTTGATGACGTTTACGGAAGTTATAGCGCCTCTGATGTGGACAAAATGATCGGGGATCTCTTGATATTCGGGACCTTACTCATGAATGCTGGTGCTGTGTTAAACTTCAAACTaaagagaaaggagacacATGGAGGATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGGGAGTTCCTCCTGAGTCTACGTTACTTCCGGATCTTCATTGCCTTATGGAACATCTTCATGATGTTTTGCATGATTCTATTGTTTGGATCATGATCAACTTCCTTGTTGGATTGGGGACCCCTGCTGAAAAATTAAACAAATATTAAATATTTTTCGAGTTGATACTTTGATGGGTTGCTCTTGTGTCAGATCCTGTGACCATTCTGTGCATTTACCTTGTATTAATATATCTCAATGTCTTGCCTGTAATTTTCAGTAAGCAGATTATTCTGCACAATAACACTTACTACTACATGTATAAGTTAGTTAAAACACATTTGTACATGTTATATTTGGACCTCCATGTTTATTCAACTGTGAATATACGAAACATTTGACTCTTGGCTGTTCTCTTCATAATTTTCTGTTCCTTTCAGGCTTTTACTATCTTATTTGGGTTGCTGACCTGTTATAGTCCTCATTTTCTTCTAAAACTTGTGAATACAATGAGAAAATATGTAAATCTCCAACCATTTTagacatgtttgatgtgtttcttACATAGGCCTTCTGATGTTACCAGCAGTCAGACTTCAATTCATCGTTGTGTACTTTTGTCACATCTATAACCTATTTCTGTATAATAAACCTTTACTCTGAAATGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18676 lncRNA upstream 29412 17314566 ~ 17314970 (+) True G15928
TU18649 lncRNA upstream 30457 17309885 ~ 17313925 (+) True LOC110494078
TU18610 lncRNA upstream 86555 17257428 ~ 17257827 (+) True G15865
TU18638 lncRNA upstream 103765 17240391 ~ 17240617 (+) True G15891
TU18473 lncRNA upstream 208012 17134140 ~ 17136370 (+) True LOC110493316
TU18651 lncRNA downstream 7825 17355695 ~ 17356974 (+) True LOC110494277
TU18656 lncRNA downstream 9831 17357701 ~ 17358053 (+) True G15909
TU18694 lncRNA downstream 11299 17359169 ~ 17360057 (+) False G15942
TU18690 lncRNA downstream 11367 17359237 ~ 17360057 (+) False G15942
TU18695 lncRNA downstream 11367 17359237 ~ 17360106 (+) True G15942
XM_036955861.1 mRNA upstream 30456 17273600 ~ 17313926 (+) False LOC110494078
XM_021568458.2 mRNA upstream 72332 17263955 ~ 17272050 (+) False klhl26
XM_021569255.2 mRNA downstream 578 17348448 ~ 17356979 (+) False LOC110494277
XM_021569333.2 mRNA downstream 578 17348448 ~ 17356979 (+) False LOC110494277
XM_036956096.1 mRNA downstream 4712 17352582 ~ 17356979 (+) False LOC110494277
XM_021569587.2 mRNA downstream 19179 17367049 ~ 17384408 (+) True slc35e1
XM_021569713.2 mRNA downstream 72526 17420396 ~ 17436449 (+) False LOC110494533
TU18429 other upstream 376592 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 423973 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 763500 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1628700 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1876394 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 306337 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 628094 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1534853 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2216979 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2220915 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile