RNA id: XM_021569587.2


Basic Information

Item Value
RNA id XM_021569587.2
length 4198
RNA type mRNA
GC content 0.41
exon number 6
gene id slc35e1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17367049 ~ 17384408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCTCGAACCCGGTCTACGAGTATTTTCTCAACATTGTACATACTGCCGCATTCATGACAACTCGGAACTTTCCGACATGGAATCTCGTTGTATAAAGTTAATGTCCGAGTTTCTCCACTTGGAACTTATCAGAATCAACCAAAAGGAAGCTCTACAAAAAACGTACCGAAATGTTAACTCGGGGAATCCGAGTTTCCGATTTGTCTGGAACGCGGCATAGTAGCTTCTCCACGTCTCACACTGCTGGCCTTGCTGCCACACACTGCCGCCGGTGACTCCGAAGTGGAAGATGGCTGCGGTGGAGCGTCCCCCAGTCAAGGAAGGGGTCCGGATAGCTTTACTCTGTTTCTGTTGGTATACTGTTAGTTCGGGAGGCAACGTAGTTAACAAAATTATTCTAAATGGGTTCCCTTATCCTGTCACAGTTTCGCTTTTTCATATATTCTCAATCGTCGTCTTCCTTCCACCGTTGCTGCGAGCATGGGGAGTCCCCAAAACAGAAATACCAACTAGATACTTCAAATGGTATATTATCCCTTTAGCTTTTGGAAAATACTTCGCATCTGTGTCGGCCCACTTCAGTATATGGAAGGTACCGGTTTCCTACGCACACACTGTCAAAGCCACAATGCCAATATGGGTTGTGTTGTTATCAAGGATTATCATGAAGGAGAAGCAAACAACAAAAGTGTACGTATCTCTCATCCCCATCATCGGAGGAGTGCTTCTGGCCACGATGACAGAAATGTCCTTTGATGTATCTGGGTTAGTCAGTGCCCTGGCTGCCAcactctgcttctctctgcaAAACATCTTCTCCAAAAAGGTGCTGCGGGACACGAGGATCCACCACCTGAGACTTCTCAACATACTGGGCTTCAATGCTGTTTTCTTCATGGTGCCTACGTGGGTTCTGGTGGACCTCTCCTCATTCTTGGTTGAGGGGGATTTTACGGGCATGTCTGAATGGACAGGCACTTTTCTCCTCCTCCTGGTCAGCGGCTTCTGTAACTTTGCCCAGAATGTCATCGCCTTCAGTGTCCTCAACCTGATCAGCCCGCTGAGCTACGCCGTGGCCAACGCCACCAAGAGGATCATGGTCATCAGCATATCGCTCCTAATGCTACGCAACCCCGTCAGCTCCACCAACATCATGGGCATGATGACGGCAATAGTGGGCGTCTTCCTGTACAACAAGGCGAAATATGACGCAAACAAGGAAGCTAAGAAAAAGCTGCTGCCTTCCTCCAAGCAGGACATGATGTCCTTTGACAATTTGGGACTGGACAAGACGCAGCCCAATGGTTCAGTGCCTTTCTCCCAAGGCTCAGACATTCAGTATGGTCGAAGCAACGTGTTGACCGACCACTTCCAGTACAGCCGGCAGGCCTACACAATGAACTATGGTGCCTCCAACCACCAGTATGTGGTTTAGGCTGGTGGATTTCTCCATGGACATATTGTATTTGTTTCCAGCAGAATTCTTAAACCACCTCTAACAAAAAGAAAGGCAAGTGCTGTCGTATTGGCGGAGAGGGAAGTATCAGTCATGAGTTGGCCAGCGTTTTGGCCAGCGTTTTGGCTAGCGTTTTGGCCAGCGTTTTGGCCAGCGTTTTGGCCAGCGTTTTGGCCAGCGTTTTGGCTAGCGTTTTGGCCAGCGTTTTGGCTAGCGTTTTGTCCCAAACATGTTCTTTAACATATTCTCTTCACCTccttgtgttgtatttattttgaTATGAACACTTAAAAAGGGATAGTTAAGtcaaaatcaaagtttgtcagatgttttcagaccCCAAATGTTGTCCACTTCCAACCTTGTCCTTCGTCAACTGTTGCAGATAGTGTCAATCTTTCCAGTTAATTTTGGATTGATGCATACCACTGGATCTACAAAACAGATGGCTTGGAACATGGACTCGTTTGACAAATTTAGATTTTGTAGTGAACtatctgtttgttttttgtttgctTGCTAAGGAAGAGATGTTCTTATTCTTTTTTTCTGTGGGAGTTCGCTAACATGGGAATAATTGTTACTGTAGCTACAATAGCGTAGTTCAAAAATAAATAGTTCACAACTTTGATATACAGTTAAAGACCATGAAATGTTTACCATGCCCATAATGCCTTGTGAATCAGGCTTGTCCTCAAGGTTACATTGACCCCAATTTTATCACAGAAGGCATGAACATTTTACATAAATGTTTTGCAGAGATTGGCAACATTTGTCCTATACATGTAAAACCGTTTGCCCTTATGACATTTTCTGGTTTGTCTTTTACTAGTGATGGAGGAATGAAAATGTATATAATCGGTTGTAGGTACAGAAAGGTTCCTGGTTTGAATACCCAATCCGAAAAGGGGAAAAATATGTCTGTGTCCTTGAACAAGGCCCttgtcagccatagtagtacctCTGGAGGTTAATGTGAAACAACACATTTTACTGCTctatccagtgtatgtgacaaaaacatatattttttcattCATTTTGTTCCATATTTACATATCGGCCACTTAATCAATTTGTATCTGATCTAGTAATAGCTGTGTAATATGTCGGTAGAAGGGTCAGGATTGGCAGACTTACTGGATCAGGCTTAAGTGTCAGACTCCTCTTCTTTTGCCTGTTTGTCATTTTGTTCTTAATATTCACACTTACAATCATGTTCTGATTAAGGAGTAGTATTTCCCCCTGCATGCAAGTAATTTAGCCTACAGGGAACAATAGCTGTTTTTCAAAGCTGGTGTGACGCACCTGAACTGGTTATTTACTTTGCAAATCAATGAAAGATGTGACGGAGACTAACTAACTTGTGTGACACTCTAGCAAAATGTTATCCTTGTTGACTATAAAAGGAATATTCTTCTAGTCCAACTTTTTTATTTGAGTTTGCGTGTTTCAATTTGCTACAGCACATTCAAGCATTTTAAGTGGAGAATTTCTTTGCCGTTTCTTAACGGCAGGAAAGTTGGATCTAATCTGATTTTATTGCATGTTCAGCAACTGGCCGGCAACAAACTACATGCTGAGATTTTGAAAAAGCAATTTCGCTGTTTACCATAAATTCAAATAATGTATTTGAATATTCCCCTATGGTATATGATGTATAGTTATGGAAGACTGCACAGAGGATCCATGTGTATTTACACATTTAAGGAACTCTtgtgtgtgagcttgtgtggaaTTCTCAGGTAGTTCCAAGCTTATCATAGTCCATTTAGTGAAACTTCCATATCATTTAGTTCGGCAGGTTTGGTCTGTTTACGTAATGAAATTCATACTGGCGTGGTGATTAGGCTATGGGGATTTGAATACATTTGACGGTCACTTATGCCTGTTCTCTGCATGTCCTCATGAGTTTTGACTTGACTTTGTCCTATCATTGTCTTTTGAATCTTCTTTACAGAGAAAACAATTTGTAGAAATCTGTAATTGGataacaaatgttttatttgtggAAGGAATATCAAATGTTGGAGCCACAATTTGGATTCTACTAAATCATTTTTCTGTCACCTTTAACATAAGATGTTATGAAGAGCTGTGGTAAATCAGCTTGGATCCCACCTTATTATTTTGTTacttattttgtattattgtaTGTCATTCTGTTCAAATGTCTCACGGTCTCTTCTTAAATCTATGGTCGAGTTTGTCACATCCTTACGCAAGGTGCCAAATGGAAGGCGCTACCTGGCTCAAAGTGCATCACAAGGATTCTTTTTTTTACTCTAATTTTTTGACCCAGTAGCATGGAGTGATGAATTCTGATGTGCATTATGTATATGTTTAATTTAACGTAAAGCCTAATTTGTCTATACAGTAAGCTAATGGATAACACTTAGAACATGAGAATTTAGAGAAACTTTGTTAGTTCTGGGACGGTATTTGCTATGAGGTTATTTACTGGAATGTACATTTGGAATGTGGGGTTTGCTTTGTAAAAGTTGTATAAATGCAATTTTTTGTGTTTTAAATAATCTTGAACTGAATTTTTACTGAACCAATGTTTATAGATTTTTATTTATGGTGTCTAGGTACAGAAAAGTATACATAAGTGCAACCATGCACAGTGTTGTCTGCTTACGTTTAGTAAATACTATTTTTAAATGTCTAAAAAAATAAATGCATTGTGAAATGAATGTATGATTTAATTTTCTTGATAAAGGTGTGCTGTACATTGAA

Function

GO: NA

KEGG:

id description
K15283 SLC35E1; solute carrier family 35, member E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18699 lncRNA upstream 1426 17365338 ~ 17365623 (+) True G15946
TU18697 lncRNA upstream 4621 17362211 ~ 17362428 (+) True G15944
TU18696 lncRNA upstream 5639 17361082 ~ 17361410 (+) True G15943
TU18695 lncRNA upstream 6943 17359237 ~ 17360106 (+) True G15942
TU18694 lncRNA upstream 6992 17359169 ~ 17360057 (+) False G15942
TU19069 lncRNA downstream 56769 17441177 ~ 17441511 (+) True G16259
TU19101 lncRNA downstream 81774 17466182 ~ 17466653 (+) True G16281
TU19117 lncRNA downstream 99870 17484278 ~ 17504919 (+) True G16294
TU19206 lncRNA downstream 227856 17612264 ~ 17612604 (+) True G16365
TU19209 lncRNA downstream 231929 17616337 ~ 17616569 (+) True G16368
XM_021569255.2 mRNA upstream 10070 17348448 ~ 17356979 (+) False LOC110494277
XM_021569333.2 mRNA upstream 10070 17348448 ~ 17356979 (+) False LOC110494277
XM_036956096.1 mRNA upstream 10070 17352582 ~ 17356979 (+) False LOC110494277
XM_021569453.2 mRNA upstream 19179 17344382 ~ 17347870 (+) False smim7
XM_036955861.1 mRNA upstream 53123 17273600 ~ 17313926 (+) False LOC110494078
XM_021569713.2 mRNA downstream 35988 17420396 ~ 17436449 (+) False LOC110494533
XM_021569798.2 mRNA downstream 35988 17420396 ~ 17436449 (+) True LOC110494533
XM_021569921.2 mRNA downstream 52381 17436789 ~ 17439767 (+) True pex11g
XM_021570045.2 mRNA downstream 57922 17442330 ~ 17456277 (+) False si:ch73-40i7.5
XM_021570121.2 mRNA downstream 57922 17442330 ~ 17456277 (+) True si:ch73-40i7.5
TU18429 other upstream 399259 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 446640 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 786167 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1651367 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1899061 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 269799 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 591556 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1498315 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2180441 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2184377 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile