RNA id: XM_021569713.2


Basic Information

Item Value
RNA id XM_021569713.2
length 2053
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110494533
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17420396 ~ 17436449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCTGATTTAGCGTTGGAGATATCCATTGTGTAACAAACGGAACAGTGTCGCGCAGCATCCTTGAATGACACAGTTCAACATGGATCACTTCATTTTCATCTAAATTTAAACTCCAAACGGACAAAGATGGGGGAGAGTGTGGATGTTCGTGCGTTGAGGGCCAGGTTCCATGCCAAGGCTGACATGGCAGGTAGCCAAGATAGTACTTCTCCAAAATCTCCACTGCCAGGATTTGGTAGAGGAGGCCCGTTGTTGGCAGATACCGGTGTTACGGCAAATGGAGGGGTCCGACATAAACTGATGCCTATGGTTCCCACACCACCACTTTCTGGATCAAGCTCCACACCCAACCTTCAGAGACTACCACCACGACCTGTAAGGGCTGAACTGGAGGGCATATCCACCATCCCCAAGCCTCATGGTGTCTTCCCCCGCCCTCCACCATCACACCGCCCCCATGGAGCCACCAAGGAGCTGCCCcgacctctacccccaccctcagACACTGACAGGCTAGGGAAGGTGAGGGTCACAGGAGAGCGCCTGCAGAATATGATGCTAACGCACAAGGGAGTACCCACCGCCCCTTCCAAGCCAGCGCCCccctccctacccagccagaggagTCTGACGGAGGTAACCCCCCTGAGAAGGACCCTGCCCTCTGAGGGCTCCAGACCCATAAAGCCCAGACGACCCCCCCACGTCAACCTGCAGGCCCATCAGAGAAACACCAGGGCACCACACCTTGCAGGGCGCCCAGGGTTAAGGAAGACTGAAGGTGGCAGCAGTAAGTCTCTTCCAGGGATAGTCAGTCTGTCTGGCCCCTCAAGACTCCCAACCAAGCCCAGCAGCCTACCACGGCAGTGTACCCCTGTACATTCTGAGGATGACCAGGGGGAATATGATGACATAGGCCTAGGCCTAGATGTAAAACCACCTCCCCCACCCCCAAACCCAAAACACCCAGGGAGCTGGGACAAAAGTGACTCCTGGAATGAAAATAGTTCTTCACAAATAGATAAGGGGAGCGATGAAAGTGAGGTCTATGATATGATTGATAAAGGCAACCAAGAGGAGGTGAAAACCACAAGTTCTGATAAGAATAAACAGAAAGAGTTGAGCCGGCAgaaggagcaggagaggagagagcaaaaGGAAATACTGGAAAGGGAAAACAAATACAGAAAGAAATTCAAGCTGGGGACTGGGGACATAGAGGTCCTTCACATGGCCAGGGTTCGACATGACTGGCAGGGGGGCAAGCAGGATCTAACTGTTCGGCAGGGAGACAGTGTGGAGATCTTACGGGTTGAGAACAATCCTGGGGGCATGTGGCTAGCCCGCACACAGACTGGCACCTATGGCTACATCATTAACACATGTATGGATGTGGACTATGAGGAAGTGAAACGTAAACTCAAACTGTCCAGAGCCCCTGACCCCtcactgccaccaccaccacctccacctcccgtCTCTTTTGAGGACAATGACATTTATTATGATGTCGACTCCTCAAATAACATGAACAGCAGCATGACTCAAGAGGAGGatgACTACGATGATGTGCAAGGAATAAACAATGACTTCCCCCTTCCACCTCCTGAAATAAGTCTACATCCAAAAATGAGCAAGAAACTGGAGAAAGATGAACAAGAGTTCAGAAAAAAATTCAAGTTTGAGGGACCGATTAAGGTGTTACACTGCATGATGGTTGACACAAGCATCAAGAAGGCAGGAGGGAAGGATCTAGCTGTGGTTCAAGGAGAGATCCTGGAGATAATTCAACTCACTAGTGGCAAGAAAGCCCTGTGTCGCAACGAGCAGGGGAAATATGGATATGTGCCCAGGGTTGTTCTTCTTCAGGCGGAAGGGGAGGATGTTTACGACGATGTTGATCATATTAACGATATCTATGACAATGACAATGTCTATGATCATACAATCCACTGAAACCTTTTTCCTTTCCTGACCAACATGGATCACCAATCCTGGACTGACAATTTAATGCTTGTCTtccagggacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18699 lncRNA upstream 54773 17365338 ~ 17365623 (+) True G15946
TU18697 lncRNA upstream 57968 17362211 ~ 17362428 (+) True G15944
TU18696 lncRNA upstream 58986 17361082 ~ 17361410 (+) True G15943
TU18695 lncRNA upstream 60290 17359237 ~ 17360106 (+) True G15942
TU18690 lncRNA upstream 60339 17359237 ~ 17360057 (+) False G15942
TU19069 lncRNA downstream 4728 17441177 ~ 17441511 (+) True G16259
TU19101 lncRNA downstream 29733 17466182 ~ 17466653 (+) True G16281
TU19117 lncRNA downstream 47829 17484278 ~ 17504919 (+) True G16294
TU19206 lncRNA downstream 175815 17612264 ~ 17612604 (+) True G16365
TU19209 lncRNA downstream 179888 17616337 ~ 17616569 (+) True G16368
XM_021569587.2 mRNA upstream 35988 17367049 ~ 17384408 (+) True slc35e1
XM_021569255.2 mRNA upstream 63417 17348448 ~ 17356979 (+) False LOC110494277
XM_021569333.2 mRNA upstream 63417 17348448 ~ 17356979 (+) False LOC110494277
XM_036956096.1 mRNA upstream 63417 17352582 ~ 17356979 (+) False LOC110494277
XM_021569453.2 mRNA upstream 72526 17344382 ~ 17347870 (+) False smim7
XM_021569921.2 mRNA downstream 340 17436789 ~ 17439767 (+) True pex11g
XM_021570045.2 mRNA downstream 5881 17442330 ~ 17456277 (+) False si:ch73-40i7.5
XM_021570121.2 mRNA downstream 5881 17442330 ~ 17456277 (+) True si:ch73-40i7.5
XM_021570221.2 mRNA downstream 31209 17467658 ~ 17516649 (+) False zgc:172302
XM_021570287.2 mRNA downstream 31209 17467658 ~ 17516649 (+) True zgc:172302
TU18429 other upstream 452606 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 499987 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 839514 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1704714 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1952408 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 217758 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 539515 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1446274 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2128400 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2132336 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile