RNA id: XM_021570637.2


Basic Information

Item Value
RNA id XM_021570637.2
length 3058
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110495326
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17596509 ~ 17601652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGCACTGGGGTCGGACAGGCTTCCTGTTTAGATTAAGACACTATGGAGCTGGTGCAAGATATGGCTCCGGAAACGACTCAATCCAGGGGGGAGAAATGCGTTGTTCTCCGAATTGTCCCATTATCCAAACTGTTACACCGAGAATCATTGAACGGCTGCTAGTTTAAGTAAACTGCTATTTGTCCTCATTCTAGCTATCGGTACCCGCCGCAGTCATTGCGGAATGGCACATAGCGTTGAACAAAGGAGCTGATTAGCTGACACTGCCATTCCAAAATGGCTGCTTTAGCTTCTGCTACTTAGCATGAAGATGGAAAGGGCCATTTTCTGTAAAAACTAGTGGTCATTCAATCTTGATCTAACAGTTGGGATAATGGGACAATTCGGAGTACAATGTATTTCTCATCCCTGGGAATATCTCACTCCGGCTCCACAGTGTCTTTATCTAAATAGGAATCCTGTCCGACCCCAGTGCAGCTGTAAGCAAGCATAGGGTCAATCTATTCTGGCTACCTTTACAGTGCCTTTAGCACACTATAGAAATGTCATGTGTCCTATGACTTCCATGGTTAgcctatttgttttgtttttgtacatgGAATTTTGACAATACATTTTTACCCCAAGAATGAATATTCAGAAACTAAACTTACCCCTCCCATTAAACGGACCTTTCCACCAAAGCTATAGTGGAATCCTACTCTAATGCCAGTTTCCCCCACATGTGACAGGAACACAAAGACTGCTATTGTCTGCCTATTCTCTTACCTTTCTAAAGTTTCAACATGCTTCACAAATCAGTCTCAGGGGTTGGCACCTGGTCACCTTTCATTCGACACTAAGGTCTGAGTGGGTTAATTTCATACTGCTTTTGGAAACCCGTCTAGAGTTTGCAAATCTGAGTTGAAATAACTTTGCATGTGATTTGTTTTTAATTCTCTGTGTACCATAGCACTTTACGGGAGGCTGATTTATTTGATGATCAACTCCAGGTGACTTCCTgtttaatgttttattttctaaATATCTGGACCAAACAGCAGAGCCCCAAAACCCCCCGGTGTATCCGCTTTGGATTTATTTGCTCCATATGGTCTGTGTGACATGGTACCCAGAAAGTGTGTGGGCGGGGGCTTAAACGTAGTATTTTGTCAGTCTTGAAATTTGATTCAGAAGTTGAGACTGTATACCAGATTCTAGAAGACAAAAGTTGGGGGAAGGAAAAAATAACGAAGAAATTGAAACAGCAGTAATTCTGCATCCCTAGAAAAATTATTTCTGTAGGCTGTGCGACTATGACGGGGCGTCAAGCCACCAACCCAGAAGATGGCAAAGAGATTGACAGTGTGAAGGAGTCCATCAGTGACATCATCAATCAACTGCAGGATATTGACCCTGCCAGGCTGTCATTCTCTCCATTCCTCGACCTGGACACCCAGATCTCTTTAGCACCAGTGTCTGACAGTCCTGAATCTTCAGTGGAGgagctccactcctcttctcactcaGTCATGGGCTCTCACCACTCCCTGGAAGCCCTGCCAGCTGATCAACTTGTCCAGCTTGATTCCTGCCACCAGCAACCCAGCGAGGGCTTCAAAGCAGAGCGAAGACcgcaagaggggaaagagggagttCAGGATGGAACTATTTCAAGTCCGATTGCTCTTGTGCAGAATTTGGAAGACCCGGTGGAAAACTGCATTAGCACTCCAAATATAGCCTCTCGCAGAGACATTCCCaatggcacagacacacagagatggaGTCCAGAATCCAACAATCTGGAGTCCACCATTGATGAAGGCCAACCGTTGCTCGGCTTGCCACCGGAGAGCATAGAGTTGACTATGTGGAGTTCCCAAGATCAAGAGACTTGTGAGGCTGTCCCAGAGGTGGCAGACAAGAGACTGTGGTGCTGCTGCTGTAGATGTTGCCAAAGTGGCCGTGTTCCTGCTGTGTGCTCAGTCCTGGCCTCCCTTCTGATTACTGCAGGGCTTCTCTATGCACTTTATTTCTATGTTCCCATAGATTCCCCAGACTGCCCTGACATGGTCAGCCGCCTCACTTTCACACTTTGCTGCTGTGCCGTAGCTGCAGTCCCCATCTTGTTGGCTATGCTGATTGGTGCTATGTGCCAGTTCTGCACTGGGTCTTTAAATCCAGCTGAGGCTCTCCACAGAAGACCGGCCATTCAGCAGCTGTTTGTCTCTGCGTCTATGGAGCAGTTGTTTCTCTACGTTCTCAATCTGTTGGTTCTGGCTACATTCCTGCCTCAAGACCAGCTGCGGGTGGTGCCCATTTTGACTGGCGTTTTCGTTGGTGGGAGGCTTATCTACTGGCTCTGCTTCCACATATGTAGCCCCTGGAGAGGCTTTGGATCGGGGCTCACTGTTTTCCCACTCCTTGCCATGGTGGCTTTCAATCTGTACTGTCTGTACGACTTGAGCCTCAGACAGCTGCTCTTTGGGTCGGAGGACACACTCTATTATCAGACCACCCCTTCATCTTGGCCTCTGGAGGTGTCACAGAGCTCCAGTGGCAAATCAGATAGTGTCATACCCACGGACATCTTGGAAACTCAGTAAGGAGGAGAGCACTGTCCCTTATAACTTAAAGAGAAAGCTTAGAACCCAGAAATAGCCCATTCCTGTGGTCTGAAGTTCAGCAGAGCTTCACAGAATGCCACTAACCTCGAAGTCTGTAAAGGCTTAAGTTGTATTTTGCTCCTCATATACAGGACCTTTTTATGTGGATTCATGCTTATTATCTGAAATGCAAGAGCCGTTCCTCCCTTTAGTTGTGGAGGAAATCTTTGAACAATGTTCTACTTCTAAATGTGTGTCCTTTTAAGCTATTCCAGTGCCTATATTTAATGTTTTGTGAAGTACTTTGACTTAAAAGTTATAATTGCAAATGGATGGATATTCTACCAATTGATGTGTTCTTATAAAAACCACTGAATGCGACTTGGGTCCCAAATAGACATTTATTTTATCCATCCAAAAGTTTGTAAATGATACTGAAGTAACAATAAAAGCTATTTGGAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19117 lncRNA upstream 91590 17484278 ~ 17504919 (+) True G16294
TU19101 lncRNA upstream 129856 17466182 ~ 17466653 (+) True G16281
TU19069 lncRNA upstream 154998 17441177 ~ 17441511 (+) True G16259
TU18699 lncRNA upstream 230886 17365338 ~ 17365623 (+) True G15946
TU18697 lncRNA upstream 234081 17362211 ~ 17362428 (+) True G15944
TU19206 lncRNA downstream 10612 17612264 ~ 17612604 (+) True G16365
TU19209 lncRNA downstream 14685 17616337 ~ 17616569 (+) True G16368
TU19213 lncRNA downstream 18843 17620495 ~ 17620872 (+) True G16372
TU19133 lncRNA downstream 62106 17663758 ~ 17672718 (+) True LOC110495874
TU19259 lncRNA downstream 83689 17685341 ~ 17685594 (+) True G16391
XM_021570752.2 mRNA upstream 128 17591274 ~ 17596381 (+) True ctdspl3
XM_036956952.1 mRNA upstream 5501 17526803 ~ 17591008 (+) False LOC110495217
XM_036956872.1 mRNA upstream 5501 17527217 ~ 17591008 (+) True LOC110495217
XM_021570482.2 mRNA upstream 71080 17518584 ~ 17525429 (+) True r3hdm4
XM_021570287.2 mRNA upstream 79860 17467658 ~ 17516649 (+) True zgc:172302
XM_036957379.1 mRNA downstream 27015 17628667 ~ 17637664 (+) False ndufs7
XM_036957504.1 mRNA downstream 27015 17628667 ~ 17637664 (+) False ndufs7
XM_036957446.1 mRNA downstream 27079 17628731 ~ 17637664 (+) False ndufs7
XM_036957567.1 mRNA downstream 27082 17628734 ~ 17637664 (+) True ndufs7
XM_036957708.1 mRNA downstream 52512 17654164 ~ 17672250 (+) False LOC110495874
TU18429 other upstream 628719 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 676100 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 1015627 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1880827 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 2128521 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 52555 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 374312 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1281071 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 1963197 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 1967133 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile