RNA id: TU19133


Basic Information

Item Value
RNA id TU19133
length 3736
lncRNA type sense_over
GC content 0.46
exon number 5
gene id LOC110495874
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17654164 ~ 17673094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atTCACCTTATTTTACTTCCACTGgacctggggcccttgttaaggtcaacggcttcatgaactttacccagtaccaggacattttatcCAAAAACTTGGTTGCCTCTTCCAGGAGACTGAAACTTGTCCGCAAGTGGATCTTCTGGCAAGACattaaccccaagcacacatgaAGAAATTGGTAATTGGCTCTGTGCtgttatcctcgcaaggtgaggtattgagaAAAAAGGGGTGTCATATATTTTGACCGCTACctttttgtgaggaaaaaaagTATGACTTGTTCAACTATATCTATTTCTCTgggcaattgtattagtataaacgaatgtttaaaaaaataaataataataaaaaaagaatTGTTAATCtgtatcaagggtgtcaatcaaaTCGAACACCACCATACATAAAAAATtatatccacaagttcatcagaCTCGGGAAGAAGATGATAAAGGGCCACATAGCCAAAAGGAAGATGATGATAAAGGGCCACACAgccaaactatccctttaaaacaCCAAACATGTAATGACATTAAGCTATCATTATGCCTACACTTGTAGCCTGAATTGATGTCTACTGCTTTCTGTGCGTGTCGGTCTCAGCCAGTCATCTGACTTATAAAAATGTCAGTGTTCTCGTTGAACCACCGTATTTGCATCGTAGGCCTGTATTCCACCCATTTTCAAGTCCGTTCGCTAATTTTTCATCCGGCTGACATGCGGTTATGATAAATGTTGTAAAAGCATACAGTTTTCTTGacattttgttttaattattgtgaTAGGCTCATGTTTTACCGGTACGGTGTAAGTCCACTTTCTTTTGCCGGGAAGACTTACCggcttactttcacccctggAGATAAGTGTGTATTTTACCACAACGAAATCACCTAAAGGATTGGTCTTGTTCAgttatttttttcttattttgttggcaGGTCACTTACTTTTTGAGCTATTTGATATATTTCCTATTCAACTTGTTAAAAAGTGAAACAACCTCAATTAAGTGACCTCAGTTTAAGAATCTCCATACTGTGTTGATCAATTCTGACAACCAAAATGGGTGGGTCTTTTTCAAGGGCTAGTTGAAGCCCCTATTCATTCAATAATTTCTCCCAATGGAGATTTCTTAGCTAATTGGGTGCCTAAAGCCACAGTTCTGTGATACCAGCAGAgttttttaatttgtatttatttatgccCAGTCATTCATCATTTATAGTTTTAACAAAACACTTTAGCTTAGCTACTTCTGAGACATCCTCTCTTACAGATGTAATTATCttgacaaaatacattttaaacatttGGAAAAAATTGAGTTCAGCACTCCGATCCCCCCCCCAAACGAggatactttttattttattgaaagaGAACATTAAATGGCCACACAGACATTTTTTACTTATTTACAAATGTATTCATAGTTTAACCCATTCTGACCTCGTTAAATGTACAAACTAAAGCCATGTCTGTTCATGATTGATGTATGAGACCCTACCTACATTGTGCTGTACTCATACCGACTCTCCTTGACTTTGTCCTGATTTCCAGCAGGAATTGGGGCTCGACTTGAGATATTTTTCTTGAGTTGACATTACCTTAGGCTGGGACTTAGGGGAATAAAAGTGATAAAATTAGAAAGTGGAGCACATCAaactgtggcacaaatcccaGGTCTGCTGTTGGGGAGTGTACCGAAGTCGTGGTATCCATCACTCCAGCCGCGATGCCCGAGGGAGAGGACCCAGGTATCTGCGCTATAGGCTAGGCGGGGGGCACTCATGGAAACGTGCCTGTAATTAGGTCGACAGAGAAGGGGAGCCAAAGAAGGTAGCACCACCTTAAAGCAGGGGAAGAATTGCGATTTGTTTTCCTCATGCAAGGTGACCTCAATAACTCAACCTCTATAGAGCCTAGTCTATTTCTATCTAGTCTCCCCCCTAACCCATTTTTCGCTCTGGTAAACTGCTGGTATCTCTGTTGCTGGCTAGCTACAGCAAGTGAcgctacaattttttttttttagggcaGATAATGGCTGGTAGCCTCACAAGCCATCTGGCATGTTAAAAGAACAGGCTTTTCAACCTCATTGAACGTTAGACCAGTCCAATACCAGGTACTTCTATTCTGTCTGAGATGAGCAAATCAGATGGGTATTAGTCAATTAAGCAACATTGCCATTTTCTCCATTATCTGACACAGTATGAAGATTCATTTCTATATTGACTTATGACTATCCATTTCTATTGTCTGCATGTTGTACCTCTTATTCTGATAGATATGATACACATTTCTTTCTACATCCATTTCCCTCTGAAATTCTACTCCAAGTTAAACATAATTGAGATTATTTAAGCGTTAGCCCGGGAAAGGTAAGTCTTGACCTTCCATTAGATGTTTTTATAAAAATTAAAGGGCATAAAAAAAACAGTAAATAGGAATTCTATGTTTCTCAGGTAGACCAGTTGTACTGTAGTTTTCATGACGTTTTTAGCACCATTTTAAATCAATTGCATAAATTGATGTATCAAAACCTTATTGTGACTGAAATACCTGAGAAACATATTGTTAAGCAACTTTTTATCTGTATTAGGCAGCAGTGTTGGCTCAGATAAGATGTAAAACTGAAACCCTCTCAAGCTGATATGTTAAAGATAAATATTAGTAATGGGTGAGTTTAGATAAGGAAGGGATTTTGAAGATAAATTACTGGTCTTGCAATGTGTGCCCTCCTTGTCCTTTGTCCAGGTGGAAGTGAAAAAGGCTGAACCTCGGGACAGCAACGCTCCTGGCCAGCTTGGACCTAACCAATGGGGACCCAGAGGCATCCTGAGTGCAGCCAATGGTTGGTCGGCACAGCCTGCCCAAGGCTGGCAGCAGAGTTATGGGCCTCCGGGAGTTTGGGTGTCTACAGGCCAGCCCTTGGGTGGGTACGGGCCCCCTTTATCTGCGGGTCGTGGAGCTCCCGCACAGCCCCCCTCGCCATTCAACGCATTCCTCGTCACAGCGGCCCCGGCGGGGGGGTTTGGGGCACCTCAGGCCTACGCTCAACAGGGATACAGTACACCACCTCAGTTTGGGTACAGTTTTGGCACGCCTCATGGTGACCAGTATGCACCACAAGGAGTGCCGCCCCCACCCACAACTCCAGGAACAGGGCCGCTGGGGTTTGCTCCAGCCACCACACCTACTCAGGACATGAGCAAAGCACCCACGGGACAGCCGGACTTCCCTTACAGCCAGTATGGTTATGGTCAGGACCTGAGTGGGTTTGGGCATACTTTCGCAGACCCCAGCCAGCAGACTGCCTCTTACGGGGCACCAACAGCACAACCGGCAGTGGGACCCCAGGCTGCAGCAGCCGTTTTTGCTCGTGTGCAGAATCACAACGTAACGGGCTTCCATCCATACCGGCGCTGAGCGTCTCCAACCGCCACAGCGCTCAGTTCTAATGTCAGGGAAATGTGTTCTGGTGATAAGCAAAACTGGATTGATGTTTTTTggaacacaaatacacacaatttGAGAAAAAGTGAACTCATAAAACCAGGGATTCCAATTACTTCTGTTACAATGTCACTTGATGTAAAAGTTGATGTAAGACTTTTGCATAACCTGTTGAAATGAAACAACCTTTGTTTCTCCCCCCATGTTTTATAGTAGGACTTAACTACTTTGCAATAGGTTTTGATTTTCTGGTCAAACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19213 lncRNA upstream 42886 17620495 ~ 17620872 (+) True G16372
TU19209 lncRNA upstream 47189 17616337 ~ 17616569 (+) True G16368
TU19206 lncRNA upstream 51154 17612264 ~ 17612604 (+) True G16365
TU19117 lncRNA upstream 158839 17484278 ~ 17504919 (+) True G16294
TU19101 lncRNA upstream 197105 17466182 ~ 17466653 (+) True G16281
TU19259 lncRNA downstream 12623 17685341 ~ 17685594 (+) True G16391
TU19149 lncRNA downstream 67057 17739775 ~ 17740617 (+) True G16315
TU19151 lncRNA downstream 67992 17740710 ~ 17743591 (+) True G16317
TU19270 lncRNA downstream 76422 17749140 ~ 17749431 (+) True G16401
TU19299 lncRNA downstream 116368 17789086 ~ 17789291 (+) True G16429
XM_036957379.1 mRNA upstream 26094 17628667 ~ 17637664 (+) False ndufs7
XM_036957504.1 mRNA upstream 26094 17628667 ~ 17637664 (+) False ndufs7
XM_036957446.1 mRNA upstream 26094 17628731 ~ 17637664 (+) False ndufs7
XM_036957567.1 mRNA upstream 26094 17628734 ~ 17637664 (+) True ndufs7
XM_021570564.2 mRNA upstream 62106 17596509 ~ 17601652 (+) False LOC110495326
XM_021571701.2 mRNA downstream 14872 17687590 ~ 17718913 (+) False LOC110496031
XM_021571787.2 mRNA downstream 14872 17687590 ~ 17718913 (+) False LOC110496031
XM_021571867.2 mRNA downstream 14872 17687590 ~ 17718913 (+) False LOC110496031
XM_036957861.1 mRNA downstream 15989 17688707 ~ 17718913 (+) True LOC110496031
XM_021572139.2 mRNA downstream 71474 17744192 ~ 17781075 (+) False LOC110496290
TU18429 other upstream 695968 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 743349 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 1082876 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1948076 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 2195770 15459904 ~ 15467988 (+) True sass6
TU19716 other downstream 303246 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1210005 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 1892131 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 1896067 19568785 ~ 19575028 (+) True LOC110502506
TU22177 other downstream 2191073 19863791 ~ 19865605 (+) True LOC110503939

Expression Profile