RNA id: TCONS_00026944


Basic Information

Item Value
RNA id TCONS_00026944
length 289
lncRNA type antisense_over
GC content 0.31
exon number 1
gene id XLOC_013110
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 50127489 ~ 50127777 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGGATGTTGTTCATGTTGGCATTTGTTGGAATGTTTTAGCATCCTTTGTTAGCAGTTTTGTCAAGTTACTAGCATGTTTAACAAGGtactcatatttttttttttatagaaagttAACACACTGACGTGTCTTTCAATATACTAACATGTTTGAACACACTGCTAAACTGCTTAAAGCAGTTATAAATGTTTAGGTtaatgctaacatgttttaataaaGTAGGGAGCTAGCAAATTTCAAGTTAACTCTTTTTGACATATTGCTAATTGATGAAAGATAGGAAGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026023 lncRNA upstream 36221 50090641 ~ 50091268 (+) True XLOC_013109
TCONS_00027195 lncRNA upstream 81342 50044316 ~ 50046147 (+) True XLOC_013108
TCONS_00026943 lncRNA upstream 121695 50004734 ~ 50005794 (+) True XLOC_013107
TCONS_00027194 lncRNA upstream 213631 49906024 ~ 49913858 (+) True XLOC_013105
TCONS_00027192 lncRNA upstream 770004 49356457 ~ 49357485 (+) False XLOC_013103
TCONS_00027196 lncRNA downstream 148560 50276337 ~ 50279483 (+) False XLOC_013111
TCONS_00027197 lncRNA downstream 361501 50489278 ~ 50490440 (+) True XLOC_013113
TCONS_00026031 lncRNA downstream 397335 50525112 ~ 50530318 (+) False XLOC_013114
TCONS_00026030 lncRNA downstream 397335 50525112 ~ 50532553 (+) False XLOC_013114
TCONS_00026032 lncRNA downstream 397350 50525127 ~ 50532543 (+) False XLOC_013114
TCONS_00026022 mRNA upstream 27340 50089000 ~ 50100149 (+) False XLOC_013109
TCONS_00026021 mRNA upstream 87328 49969568 ~ 50040161 (+) True XLOC_013106
TCONS_00026019 mRNA upstream 698634 49411417 ~ 49428855 (+) False XLOC_013104
TCONS_00026015 mRNA upstream 859633 49248389 ~ 49267856 (+) False XLOC_013101
TCONS_00026024 mRNA downstream 148156 50275933 ~ 50356788 (+) False XLOC_013111
TCONS_00026025 mRNA downstream 148560 50276337 ~ 50356788 (+) False XLOC_013111
TCONS_00026026 mRNA downstream 148876 50276653 ~ 50356662 (+) False XLOC_013111
TCONS_00026027 mRNA downstream 151081 50278858 ~ 50356786 (+) True XLOC_013111
TCONS_00026028 mRNA downstream 334204 50461981 ~ 50463268 (+) True XLOC_013112
TCONS_00026020 other upstream 680447 49411417 ~ 49447042 (+) True XLOC_013104
TCONS_00026002 other upstream 1574281 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026000 other upstream 1688876 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00025985 other upstream 3550350 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00025947 other upstream 4552311 45526483 ~ 45575178 (+) False XLOC_013054