RNA id: XM_021572819.2


Basic Information

Item Value
RNA id XM_021572819.2
length 1577
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110496754
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17856865 ~ 17860158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACACCTAGCGCTCACGAGCATGTGTATTTTCAAAATGATTTCCTGAGCAAAGGCAACACATGTTCCAGCCGTTCTGACAATAGGACGCAGGCAGAAAAGAGCAACAAAAATGAGAAGGTCGTCTCGTTTGCTTGAGTCAACAGCTTTACTTGTGATCAGCATTCTGTGCTTGGTCATAATTTTTATTAAAGAGGACATTCGTCCTAAAAAACCCTCAAACCATTTCCAGATAAACAGGAGGGAATCAACCTATCAAAACAGACCTCAGAAACCAACCAGTGAGAGCGCAGGTGTTTCTACCTGGGGCCATTGTGAACGGAATGAGTCTGCGGCCAATGTGTCAGGGTTTTCCTCTCTGCCAGTTCACATCCAAGACTTCCTTTTCTATCGTCACTGCCGCCATTTCCCAATGCTGCTGGATGTACCTGATAAATGTGGAGGCCCTCACAAGTCTGCTGACGTCTTTCTTCTGCTGGTCATAAAAAGCTCACCTGCGAATTACGACCGCCATGAGGTACTACGGAAAACCTGGGCCAAGGAGAGACTGCAGAATGGAGTCTGGATTCACAGGATTTTTCTCTCGGGAACAACAGGCACAGGCTTTGAGAAGCGCAAGCTAAATAAGCTTCTACGACTGGAGAACCGTGAGCATAATGACATCTTGCAGTGGGACTTCAACGACTCCTTCTTCAACCTCACCCTGAAGCAGATTTTGTTCTTAGAATGGATGGACAAGAACTGCCGCCAGGCCCGATTTCTCCTCAACGGTGACGATGATATCTTCGCCAACACAGATAACATGGTGGACTACCTTCAGAGTCTAAAAGACAATAATGGTGACAAGCACCTTTTTGCAGGTCATCTAATCCGCTATGTAGGACCCATTAGAGAGTCAGGGAGCAAATACTATGTCCCAGTCCAGGTTCAAGAGTCAGACTCATATCCCCCTTACTGTGGGGGAGGGGGCTTCCTGCTCTCTGGAAACACAGCTATGGTCATTTACAAAATGACCCATACCATTCCCATTTTGCCAATTGATGATGTCTACATGGGAATGTGTCTGGAAAAGGCTGGTCTTGGGCCAGAGTCCCATTTCGGAGTCAGGACTGCTGGACTTCATGTCCCCTCCCAAAACGTGGACACTTACGATCCTTGTTATTACAGGGAAATAATTTTAGTACACAGATTTctgcctcatcagatatataTTATGTGGCACGGAATACATGAACCTAACTTGAGATGTAGTAATTCGCAAGGTTCTCTTTAGCCATCTGTCCTGTTGAAATCAGTTGCCTGCTGAGGTTTGCTTTTCCAGTCTTTTTTTCAAACAGGTGTGATGTCTGaaagttgtttttgttgttgtaaatacAGACTAATTTTAAGATGTAAATTATGGGATTGATTGCTTCTTCTGTGTATGTACATAGAAATGATCAAAGTTTATATGATGTATTGCTTTAAGTCAGTATCACTTCTTTCTATTTAATAAATGAAAACATgcatattaaaaaatatatatgatatTGATTCTATATCAAACGCGAATAAAATAAAATGCATCTTTGATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19315 lncRNA upstream 41415 17815177 ~ 17815450 (+) True G16440
TU19312 lncRNA upstream 48045 17808586 ~ 17808820 (+) True G16437
TU19311 lncRNA upstream 48318 17808277 ~ 17808547 (+) True G16436
TU19310 lncRNA upstream 48983 17807662 ~ 17807882 (+) True G16435
TU19306 lncRNA upstream 56948 17796391 ~ 17799917 (+) True LOC110496410
TU19286 lncRNA downstream 10892 17871050 ~ 17873125 (+) True G16417
TU19381 lncRNA downstream 58418 17918576 ~ 17918787 (+) True G16499
TU19382 lncRNA downstream 58782 17918940 ~ 17919268 (+) True G16500
TU19384 lncRNA downstream 61894 17922052 ~ 17922340 (+) True G16502
TU19385 lncRNA downstream 63043 17923201 ~ 17923456 (+) True G16503
XM_036989310.1 mRNA upstream 847 17842536 ~ 17856018 (+) True LOC118966550
XM_036958378.1 mRNA upstream 19926 17834974 ~ 17836939 (+) True LOC118942967
XR_002469557.2 mRNA upstream 56150 17796045 ~ 17800715 (+) False LOC110496410
XR_002469560.2 mRNA upstream 57080 17796250 ~ 17799785 (+) False LOC110496410
XM_021572139.2 mRNA upstream 75790 17744192 ~ 17781075 (+) False LOC110496290
XM_036958559.1 mRNA downstream 54351 17914509 ~ 17943499 (+) False slc5a5
XM_021573060.2 mRNA downstream 54361 17914519 ~ 17943499 (+) False slc5a5
XM_021573106.2 mRNA downstream 72693 17932851 ~ 17943499 (+) True slc5a5
XM_021573446.2 mRNA downstream 115760 17975918 ~ 17988429 (+) False ccdc124
XR_005038787.1 mRNA downstream 132889 17993047 ~ 18001455 (+) False kcnn1b
TU19135 other upstream 191857 17654207 ~ 17665008 (+) False LOC110495874
TU18429 other upstream 889075 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 936456 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 1275983 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 2141183 15695041 ~ 15715682 (+) True LOC110490510
TU19716 other downstream 115806 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1022565 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 1704691 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 1708627 19568785 ~ 19575028 (+) True LOC110502506
TU22177 other downstream 2003633 19863791 ~ 19865605 (+) True LOC110503939

Expression Profile