RNA id: XM_021573060.2


Basic Information

Item Value
RNA id XM_021573060.2
length 2229
RNA type mRNA
GC content 0.50
exon number 15
gene id slc5a5
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17914509 ~ 17943499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTAACATGGAGCCTCAGGACTCGACTTTGACTGATGACTTGAACTTATTTGGACAGGTTTTGTAAGTTATTTTGTGGCACGGAGTCTACGTGGATTACTCTACACACATAGCCAGAGACAATAAGCAGCATCGCTCTTGCAAAAAAACCTGCAACAGATTGGCTAGTGAAATGCATACACAGCACTCTGATTGGACCAACAAACTGTCAAACAACACAGATCGGTCCCAAGAAACACCTGGAGCATCTGATTCTACCATCCAACACGACAAGGAGGACAAAGCAATGGATGGAGAACATATCCCCGAACGACCCCGACCAGGCTTTGTCCTGGCAGACTACGTCGTCTTTGCTGCCATGCTGCTCGTTTCCATGGGAATTGGGCTGTTCCAGGCCCTGAAGAAGAAACCGGGTGATGCTAAGGTGGATGACTTCTTCACCGGTGGCCGTAGTATGCCAGTCATACCCGTGGGAATGTCACTGTGTGCCAGCTTCATGTCAGCTGTCCAGGTCCTGGGAGTGCCAGCTGAAGCCTCCCTCTATGGTTTTAAGTTCCTATACATGTGCCTTGGGCAAACCATCAACTCCTGTCTGACTGCATACCTGTTCCTGCCAGTGTTCTACCGCCTTGGTATCACCAGCACCAATGAGTACCTCAAGATGAGATTTGGCAGAGAGATGCAGCTGCTTGGAAGTGTCCAGTTTATAGTCTCAACACTGCTCTACACAGGAATTGTGATCTATGCTCCAGCCTTAATCCTGAGCCAAGCCACTGGGCTCAATATGTGGGCATCCCTCTTCTCAACTGGGTTCATTTGTACTTTTTACACCACATTGGGGGGCATGAAAGCAGTCATCTGGACAGACGTGTTCCAGATCCTGGTCATGCTCTCTGGCTTCATCGCCATCTTCGTCCAGGGCACTGTTTTGGTTGGTGGGCCAGCAATGGTTTTGGAGATTGCCAACAATGGATCACGAATTAACTTTAATGATTTTGACTTCGACCCAAGGAGGCGATACACATTCTGGAGCTTTACTGTTGGCGGTACGCTGTTGTGGCTGTCCATGTATGGTGTGAACCAGGCACAGGTACAACGCTACATCTCCTGCAGAACTGAGCGACAGGCCCAGTGGGCGTTGTTTGTCAACCAAGTGGGCTTGTGTCTCGTTGTAGGCAGTGCAGCCACCTGCGGCATTGTCATGTTTGCCTTGTACTCCCACTGTGACCCTTTGACGTCTGGAAAGATTGCTGCTCCAGACCAGTATATGCCATACTTGGTGCTGGACATCTTTCAAGACCACCCTGGCTTTCCCGGACTTTTTCTGGCTTGTGCATACAGTGGCACCCTGAGTACCGCCTCCACCAGCATCAACGCTATGGCAGCTGTTACCATGGATGATCTACTGAAACCAACTCTAGCCAACATGTCACAGAAGAGGTTGATTTTAATTTCCAGAGGGCTGTCTTTCATGTATGGGGCTGGATGTATCACGGTGGCTGCTCTCTCATCCTTCTTGGACTGGGGAGTTCTTCAAGGGTCCTTCACAGTCATGGGAGTGGTCAGTGGCCCACTTCTTGGGGCTTTCGTCCTGGGGATGTTTGTTCCCGCTAGTAACAGGCCGGGCGTGTTTAGTGGCGTGGCGGTGGGCTTCTCCATCTCCTTGTGGCTGGTCATTGGATCAACTCTCCATCCTCCCAGTCTGCAGACCATGGGAGTCCTGCCCACCTATACAGATCAGTGTCCATCAAGTAACAGCACAGTCAACAGCAGCCTGGGCATGGACACACCCTCCGCCTCCACGCCGCTTCCCCTATATCAACATGGACGGACGAGTCTGCAGAACTTTTATTCCATGTCCTACCTCTACTTTGGTGCcgtggggacaatttcagtggtGCTGGTTGGGGTAGCTGTGAGCTATGCAACAGGACCTACCAAGAGAAATACCATTGACCCTGGCTTGCTCTGGTGGGATTTACAACAGAAAACCCTGGACAGTCAGATGGACAATCCACAGATAGTGCCTCTACACCACTTGCACAATGAAGATGTTGGTGAAAAAGAGGCCCTGAGCGCTGCGCGGAAAACTACCTTAACTCAATGTTCCCCAATAAAGTATAGAGAGCtttgagagaagagaggtggacacacacacacacacacacacacacacagtaccagacaaaagtttggacacgtactcatttaagggtttttctttatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19286 lncRNA upstream 41394 17871050 ~ 17873125 (+) True G16417
TU19315 lncRNA upstream 99069 17815177 ~ 17815450 (+) True G16440
TU19312 lncRNA upstream 105699 17808586 ~ 17808820 (+) True G16437
TU19311 lncRNA upstream 105972 17808277 ~ 17808547 (+) True G16436
TU19310 lncRNA upstream 106637 17807662 ~ 17807882 (+) True G16435
TU19733 lncRNA downstream 14899 17958398 ~ 17958622 (+) True G16825
TU19717 lncRNA downstream 30631 17974130 ~ 17974919 (+) True G16809
TU19715 lncRNA downstream 32465 17975964 ~ 17988833 (+) False ccdc124
TU19718 lncRNA downstream 61779 18005278 ~ 18007518 (+) True G16810
TU19719 lncRNA downstream 65481 18008980 ~ 18011312 (+) True G16811
XM_021572819.2 mRNA upstream 54361 17856865 ~ 17860158 (+) False LOC110496754
XM_036958476.1 mRNA upstream 54361 17858466 ~ 17860158 (+) True LOC110496754
XM_036989310.1 mRNA upstream 58501 17842536 ~ 17856018 (+) True LOC118966550
XM_036958378.1 mRNA upstream 77580 17834974 ~ 17836939 (+) True LOC118942967
XR_002469560.2 mRNA upstream 114734 17796250 ~ 17799785 (+) False LOC110496410
XM_021573446.2 mRNA downstream 32419 17975918 ~ 17988429 (+) False ccdc124
XR_005038787.1 mRNA downstream 49548 17993047 ~ 18001455 (+) False kcnn1b
XM_021573172.2 mRNA downstream 49556 17993055 ~ 18002431 (+) False kcnn1b
XM_021573328.2 mRNA downstream 53593 17997092 ~ 18002431 (+) True kcnn1b
XR_005038806.1 mRNA downstream 132478 18075977 ~ 18096407 (+) True LOC118943582
TU19135 other upstream 249511 17654207 ~ 17665008 (+) False LOC110495874
TU18429 other upstream 946729 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 994110 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 1333637 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 2198837 15695041 ~ 15715682 (+) True LOC110490510
TU19716 other downstream 32465 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 939224 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 1621350 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 1625286 19568785 ~ 19575028 (+) True LOC110502506
TU22177 other downstream 1920292 19863791 ~ 19865605 (+) True LOC110503939

Expression Profile