RNA id: XM_021573106.2


Basic Information

Item Value
RNA id XM_021573106.2
length 2191
RNA type mRNA
GC content 0.50
exon number 15
gene id slc5a5
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17914509 ~ 17943499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACTGTAACAGACCAAGTTTGCAGAGCCACTTTTAATGAAAGGTGCTGCTATTCTTCGTCATCACTTGGCATTCTAAAAATGTCCTAATGTCTTAGGCTATTGTCAATTGAAACTCTGCAGAAGAAGAAGGTTAGAAGGTAAAGGGTTTTCAGAGACTGGGAATTTGAGTTTTAGAGAGGACACAGTCCCAAGAAACACCTGGAGCATCTGATTCTACCATCCAACACGACAAGGAGGACAAAGCAATGGATGGAGAACATATCCCCGAACGACCCCGACCAGGCTTTGTCCTGGCAGACTACGTCGTCTTTGCTGCCATGCTGCTCGTTTCCATGGGAATTGGGCTGTTCCAGGCCCTGAAGAAGAAACCGGGTGATGCTAAGGTGGATGACTTCTTCACCGGTGGCCGTAGTATGCCAGTCATACCCGTGGGAATGTCACTGTGTGCCAGCTTCATGTCAGCTGTCCAGGTCCTGGGAGTGCCAGCTGAAGCCTCCCTCTATGGTTTTAAGTTCCTATACATGTGCCTTGGGCAAACCATCAACTCCTGTCTGACTGCATACCTGTTCCTGCCAGTGTTCTACCGCCTTGGTATCACCAGCACCAATGAGTACCTCAAGATGAGATTTGGCAGAGAGATGCAGCTGCTTGGAAGTGTCCAGTTTATAGTCTCAACACTGCTCTACACAGGAATTGTGATCTATGCTCCAGCCTTAATCCTGAGCCAAGCCACTGGGCTCAATATGTGGGCATCCCTCTTCTCAACTGGGTTCATTTGTACTTTTTACACCACATTGGGGGGCATGAAAGCAGTCATCTGGACAGACGTGTTCCAGATCCTGGTCATGCTCTCTGGCTTCATCGCCATCTTCGTCCAGGGCACTGTTTTGGTTGGTGGGCCAGCAATGGTTTTGGAGATTGCCAACAATGGATCACGAATTAACTTTAATGATTTTGACTTCGACCCAAGGAGGCGATACACATTCTGGAGCTTTACTGTTGGCGGTACGCTGTTGTGGCTGTCCATGTATGGTGTGAACCAGGCACAGGTACAACGCTACATCTCCTGCAGAACTGAGCGACAGGCCCAGTGGGCGTTGTTTGTCAACCAAGTGGGCTTGTGTCTCGTTGTAGGCAGTGCAGCCACCTGCGGCATTGTCATGTTTGCCTTGTACTCCCACTGTGACCCTTTGACGTCTGGAAAGATTGCTGCTCCAGACCAGTATATGCCATACTTGGTGCTGGACATCTTTCAAGACCACCCTGGCTTTCCCGGACTTTTTCTGGCTTGTGCATACAGTGGCACCCTGAGTACCGCCTCCACCAGCATCAACGCTATGGCAGCTGTTACCATGGATGATCTACTGAAACCAACTCTAGCCAACATGTCACAGAAGAGGTTGATTTTAATTTCCAGAGGGCTGTCTTTCATGTATGGGGCTGGATGTATCACGGTGGCTGCTCTCTCATCCTTCTTGGACTGGGGAGTTCTTCAAGGGTCCTTCACAGTCATGGGAGTGGTCAGTGGCCCACTTCTTGGGGCTTTCGTCCTGGGGATGTTTGTTCCCGCTAGTAACAGGCCGGGCGTGTTTAGTGGCGTGGCGGTGGGCTTCTCCATCTCCTTGTGGCTGGTCATTGGATCAACTCTCCATCCTCCCAGTCTGCAGACCATGGGAGTCCTGCCCACCTATACAGATCAGTGTCCATCAAGTAACAGCACAGTCAACAGCAGCCTGGGCATGGACACACCCTCCGCCTCCACGCCGCTTCCCCTATATCAACATGGACGGACGAGTCTGCAGAACTTTTATTCCATGTCCTACCTCTACTTTGGTGCcgtggggacaatttcagtggtGCTGGTTGGGGTAGCTGTGAGCTATGCAACAGGACCTACCAAGAGAAATACCATTGACCCTGGCTTGCTCTGGTGGGATTTACAACAGAAAACCCTGGACAGTCAGATGGACAATCCACAGATAGTGCCTCTACACCACTTGCACAATGAAGATGTTGGTGAAAAAGAGGCCCTGAGCGCTGCGCGGAAAACTACCTTAACTCAATGTTCCCCAATAAAGTATAGAGAGCtttgagagaagagaggtggacacacacacacacacacacacacacacagtaccagacaaaagtttggacacgtactcatttaagggtttttctttatttt

Function

GO: NA

KEGG:

id description
K14385 SLC5A5, NIS; solute carrier family 5 (sodium/iodide cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19392 lncRNA upstream 2267 17930238 ~ 17930584 (+) True G16510
TU19387 lncRNA upstream 7411 17924985 ~ 17925440 (+) True G16505
TU19385 lncRNA upstream 9395 17923201 ~ 17923456 (+) True G16503
TU19384 lncRNA upstream 10511 17922052 ~ 17922340 (+) True G16502
TU19382 lncRNA upstream 13583 17918940 ~ 17919268 (+) True G16500
TU19733 lncRNA downstream 14899 17958398 ~ 17958622 (+) True G16825
TU19717 lncRNA downstream 30631 17974130 ~ 17974919 (+) True G16809
TU19715 lncRNA downstream 32465 17975964 ~ 17988833 (+) False ccdc124
TU19718 lncRNA downstream 61779 18005278 ~ 18007518 (+) True G16810
TU19719 lncRNA downstream 65481 18008980 ~ 18011312 (+) True G16811
XM_021572819.2 mRNA upstream 72693 17856865 ~ 17860158 (+) False LOC110496754
XM_036958476.1 mRNA upstream 72693 17858466 ~ 17860158 (+) True LOC110496754
XM_036989310.1 mRNA upstream 76833 17842536 ~ 17856018 (+) True LOC118966550
XM_036958378.1 mRNA upstream 95912 17834974 ~ 17836939 (+) True LOC118942967
XR_002469560.2 mRNA upstream 133066 17796250 ~ 17799785 (+) False LOC110496410
XM_021573446.2 mRNA downstream 32419 17975918 ~ 17988429 (+) False ccdc124
XR_005038787.1 mRNA downstream 49548 17993047 ~ 18001455 (+) False kcnn1b
XM_021573172.2 mRNA downstream 49556 17993055 ~ 18002431 (+) False kcnn1b
XM_021573328.2 mRNA downstream 53593 17997092 ~ 18002431 (+) True kcnn1b
XR_005038806.1 mRNA downstream 132478 18075977 ~ 18096407 (+) True LOC118943582
TU19135 other upstream 267843 17654207 ~ 17665008 (+) False LOC110495874
TU18429 other upstream 965061 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 1012442 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 1351969 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 2217169 15695041 ~ 15715682 (+) True LOC110490510
TU19716 other downstream 32465 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 939224 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 1621350 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 1625286 19568785 ~ 19575028 (+) True LOC110502506
TU22177 other downstream 1920292 19863791 ~ 19865605 (+) True LOC110503939

Expression Profile