RNA id: TU19716


Basic Information

Item Value
RNA id TU19716
length 1607
RNA type TUCP
GC content 0.50
exon number 5
gene id ccdc124
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17975918 ~ 17991176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGGGTTATTTCATAGCTTAATGGTCTGACACTCAGATGCCTTTTTCGAAACAACATCTGTCGCTCAGgaaaatgccacgggcactatctgatgtgtgaagacatttcactgcagctaatgtaaaaggaaaagctgtgtacattttgcaaatactgtgccaaatcatatgtgaagaatgcaacaaagatgcagaatctggtcaagtgcataaagttccctcagcgctcacaacaagcaacctctgacaaaagtccctcaacttctattcgagTATTccacaagagcacagacacaagggacaacagacgcacctgtctctacattgcagatgagctgaaggcagtcatcaatgaccttgaaccacagaaggtatttgcacaggtgacagacaatgctgtgaacatgaaggctgcttggtctaaagtggaggagtcctaccctcacaccacacccattggctgttctgctgacaggtgtgacatatcaagaagatgattaagcagcatgatcattaacAGTGCAGataatttggcagtacaACCACAGactaaccacgccagcccaggacctccacatctggcctcttcacctgcaggatcttcTTAGACAAGACACCCGGACAGCCAATGAAACTGAGGATTagttctgtctgtaatatagccATTTAGTcagaaaaaaataattctgattggctgggtctggcacccatggctgtgcaccttcccagtcatgtgaaatccatagattagagcctaatgaatttatttaaattgactgatttccttatatgaactgtaactcagtgaaattgttgtatgttgtttttatatttttattcagcaTAGTTAATGAATTGCTATCTAGAAGACATCAATGTTATAAATCTAATGTTGTACCGGCTGTTCGCGCTGTGGcggatgaatcagaattagttgggtaacatagataattaaGATGTTTTAGTTTCATAATATGCTTATGTGAGAAACTTGTCATTAGAATGCATCCCTTTGGACTCTagtgttggcagttgcactttTCCCTCATCTAGGGCtcagtcacttggggcccagagagggtagaggtcagaatggaacattgtcttcatatgtgaatgtgtctacctattcttaaaccatgtgaagggatggcgtgattaatggggaaccaattacttgtctccacaatgtctgtgcgcATGTCACTCCCCccagtgagcttgtccaggagtgggGTCAAGAGGGGGTttacttgagatgggagtatctagagttgacaattgatatatgccattggatgagttgCTGTTTTTGtactatgaagtaccaggaacaagattagaacctcgtcttagggaccaaactgaacgataatttatagcgaatgctatctggctatgggatactcctctctcaagtaaaagtcCTTCTTTGTGAACAGTTCCTAAAtatctgtggtttgtcatgtcaaaggggggtggatctttgctaaaAAAAAGATTTCAGTAGCCATTGTGTTGACACTCAACGGTTCATTAGAAATGGCGAATCGTTGAAAGTCAAGTGCTAATGCAAAGCTCTTATTATTAAAgatgtagtttaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19717 lncRNA upstream 1045 17974130 ~ 17974919 (+) True G16809
TU19733 lncRNA upstream 17342 17958398 ~ 17958622 (+) True G16825
TU19392 lncRNA upstream 45380 17930238 ~ 17930584 (+) True G16510
TU19387 lncRNA upstream 50524 17924985 ~ 17925440 (+) True G16505
TU19385 lncRNA upstream 52508 17923201 ~ 17923456 (+) True G16503
TU19718 lncRNA downstream 14102 18005278 ~ 18007518 (+) True G16810
TU19719 lncRNA downstream 17804 18008980 ~ 18011312 (+) True G16811
TU19870 lncRNA downstream 78262 18069438 ~ 18069653 (+) True G16933
TU19883 lncRNA downstream 103489 18094665 ~ 18095197 (+) True G16946
TU19899 lncRNA downstream 130180 18121356 ~ 18121672 (+) True G16962
XM_036958559.1 mRNA upstream 32465 17914509 ~ 17943499 (+) False slc5a5
XM_021573060.2 mRNA upstream 32465 17914519 ~ 17943499 (+) False slc5a5
XM_021573106.2 mRNA upstream 32465 17932851 ~ 17943499 (+) True slc5a5
XM_021572819.2 mRNA upstream 115806 17856865 ~ 17860158 (+) False LOC110496754
XM_036958476.1 mRNA upstream 115806 17858466 ~ 17860158 (+) True LOC110496754
XR_005038787.1 mRNA downstream 1871 17993047 ~ 18001455 (+) False kcnn1b
XM_021573172.2 mRNA downstream 1879 17993055 ~ 18002431 (+) False kcnn1b
XM_021573328.2 mRNA downstream 5916 17997092 ~ 18002431 (+) True kcnn1b
XR_005038806.1 mRNA downstream 84801 18075977 ~ 18096407 (+) True LOC118943582
XM_021573900.2 mRNA downstream 115646 18106822 ~ 18108826 (+) True LOC110497621
TU19135 other upstream 310956 17654207 ~ 17665008 (+) False LOC110495874
TU18429 other upstream 1008174 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 1055555 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 1395082 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 2260282 15695041 ~ 15715682 (+) True LOC110490510
TU20408 other downstream 891547 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 1573673 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 1577609 19568785 ~ 19575028 (+) True LOC110502506
TU22177 other downstream 1872615 19863791 ~ 19865605 (+) True LOC110503939
TU22214 other downstream 1924410 19915586 ~ 19915832 (+) True G19083

Expression Profile