RNA id: XR_005039187.1


Basic Information

Item Value
RNA id XR_005039187.1
length 1634
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118943879
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 18690261 ~ 18692032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTGAAACGGTTCCTCAGGCTACTATGCCTGGTGCTCCCCATGCTGCTGGTCTCCTTGGACACGAAGGCATCAGGGTGACAGAGGCTTGCCCTGAGGCAGCACAGTTCACACAGCACAGTTCTTCACAGTTCACACAAGCCCCTGGTAACATGTCTCCACCCTGAGGTAGATGGTGGTAATTGCTTATGGGAGTGAAGTGTTCATTTAATTTGACCATGTAGTAATGCAGTACAACAACAAGACAGATATGatatgatttaaaaacatttatttatacaTAAAATGTACTGTGGCCatcaaaaaaatgaataaaactcTACAGTTTTGTAcaatacatacactatatatacaaaagtatgtggacacgacttcaaattagtggatttggctatttcagccacacccgttactgacaggtgtataaaatcaagcacacagccatgcaatctccctagacaaacattgacagtagcatggccttactgaagagctcagtgactttcaacgtggcaccgtcataggatgccacctttccaacaagtcagttcaccAAATTtttaccctgctagagctgccccggtcaactataagtgctgttattgtgaagtggaaatatctaagagcaacaacggctcagcagctaagtggtaggccacacaagccacTACAGAATAGGACCGCCGAGTGTTGAAGTGCGTAGCttttaaaaatcgtctgtccttggttgcaataCCTCactacgagttccaaactgcctctgaaagcaatgtcagcacaataactgtttatcgggagcttcatgaaatggatttccatggccgagcagctgcacaaaagcctaagatcaccacgcgcaatgccaagcgtcggcattgctagtaggtgtccacatacttttggtcatgtagtgtatgtcttTGTATATATGTATAAATCTTATTGTATTCTCAAGAATATCTAAAAACAAAAATAGATTTTTAAATCTCAGTTCTAGTAAAGCACTGAAAAAGTGCACACAGCATATAGACCTCAATGACAGAAACAAGTCATCTGTTTTGAGGCTCAAACAGTGAAACAAAATAAAGCTTCTATAATGCTTCTTTTATAAGAAATCTTGAACAACTCTTTAAAGTTTTTTTTGTAATGCATAACATAAAATGAACTTTAGCAGTATGTGCCAGGTCCTGATCTGATgacaagacaaaaaaaatgaacaaaactAATAACAGAGAAAACCGTTAGCCTGTATCAAAGCTGTATCATGGTTGTATTATGGCTGTATCAAGGCTGTATCTTCATAGTTGTATCAAGACTGTATCTAGGCTGTATCAAGGCTGTATCATGGTTGTATCAAGGCTGTATCTTCATAGTTGTATCATGGTGGTATCAAGGCTGTATCTTCATAGTTGTATCATGGTGGTATCAAGGCTGCATCAAGGCTGTATCTTCATAGTTGTATCATGGTGGTATCAAGGCTGCATCAAGGCTGTATCTTCATAGTTGTATCAAGGCTGTTTCTTCATAGTTTCTTCATGGCTGTATCATGCTTGTATCTAGGCTGTAACAAGGCTGTATCTTCATAGTTGTATCATGGTTGTGCCAATGAGATATATTTTCTACTACCCTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20937 lncRNA downstream 133165 18556047 ~ 18557096 (-) True G17906
TU20921 lncRNA downstream 155515 18528310 ~ 18534746 (-) True G17890
TU20864 lncRNA downstream 201702 18488215 ~ 18488559 (-) True G17837
TU20893 lncRNA downstream 220493 18468782 ~ 18469768 (-) True G17865
TU20792 lncRNA downstream 298728 18390123 ~ 18391533 (-) False LOC110497762
TU21035 lncRNA upstream 74027 18766059 ~ 18766711 (-) True G17999
TU21076 lncRNA upstream 130620 18822652 ~ 18838680 (-) True G18033
TU21082 lncRNA upstream 136956 18828988 ~ 18830361 (-) True G18039
TU21085 lncRNA upstream 142640 18834672 ~ 18835532 (-) True G18042
TU21098 lncRNA upstream 154342 18846374 ~ 18882728 (-) True G18054
XM_036960119.1 mRNA downstream 11822 18563582 ~ 18678439 (-) False LOC110498717
XM_036960161.1 mRNA downstream 11822 18563836 ~ 18678439 (-) True LOC110498717
XM_021575380.2 mRNA downstream 11823 18562439 ~ 18678438 (-) False LOC110498717
XM_021575685.2 mRNA downstream 11823 18563799 ~ 18678438 (-) False LOC110498717
XM_021575766.2 mRNA downstream 11823 18563799 ~ 18678438 (-) False LOC110498717
XM_036960783.1 mRNA upstream 76252 18768284 ~ 18815021 (-) False LOC110499356
XM_021576482.2 mRNA upstream 76252 18768284 ~ 18825716 (-) False LOC110499356
XR_005039242.1 mRNA upstream 76252 18768284 ~ 18825716 (-) True LOC110499356
LOC110531991 mRNA upstream 142130 18834162 ~ 18841489 (-) True LOC110531991
XM_036961087.1 mRNA upstream 184515 18876547 ~ 18885638 (-) False mydgf
TU20791 other downstream 295401 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 298728 18390123 ~ 18391533 (-) False LOC110497762
TU19906 other downstream 595323 18089880 ~ 18094938 (-) False LOC110497564
TU21090 other upstream 184845 18876877 ~ 18885652 (-) True mydgf
TU21902 other upstream 938461 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 2107088 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 2393266 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 2393266 21085298 ~ 21089250 (-) False LOC118945319

Expression Profile