RNA id: XM_021580480.2



Basic Information


Item Value
RNA id XM_021580480.2
length 903
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110502382
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19536427 ~ 19538782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAACAACATTTCACTCTTGACTGCTCTGTATCCGTGAATTACCCGCTGTCAATCAAAAGGGTAACGTCAGCTGATTGTGCTCTTGAAGTCAATGTCCCACCCATGAAAATGTGATCCCACCATTATCTTCTCATCTTAACAACAACGATATCAGTCTGCAAAGGAGTGCTTTAATATTCTATTCAAAGTTGAAAGTACAGTGCCAGTGAGTGAAATAACAATAACCAAGAGAAGCAATGTCGCTCACTAAGGACCTAATGCACCCTACTTTGGAGGCTGAGAGGCAAAGACACAAGAAGAAGAGGTTGGTTCAGAGTCCCAACTCCTACTTCATGGATGTAAAATGCCCTGGCTGCTACAGGATCACCACAGTGTTCAGTCATGCCCAGAGAGTGGTGCCCTGTGGCGGCTGCTCCTTCGTCCTGTGCCAGCCCAGAGGGGGGAAATGCCGCCTCACTGAGGGCTGCTCCTTCAGAAGAAAGCAACGCTGAGTGAGATTTCAGTAGTGAGCTATCAACTGTGATAGTCGTAAATTGTGGACCATGGATGTTTTGTAAATTATCACATTATATTGAATGGGGATTATTCAGATGAGCTGATTGGCAGTGTTTTGTCCTTATGATATAAACAGATTACAATATCGTTCAGATACAATATGCCTTTTTGTAATGAATAGgtataatatactgtatgcaGTGTATGAAGtggtttgtctctgtgtttgaCATTTCTATTTTTCTtactaaataatacattaaataaTCTCTTGAGCCAGGTTGTGTAAAAATTTATTAGACTGAAAGCGGGAAAAGTGAATGAAACATTTTAACACAGACTGTCAAATAAGGATGAGAAGCCTTGATTGATTACCTTCACAGACAACAATAAAACCTTTTGACGGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21927 lncRNA downstream 33880 19502234 ~ 19502547 (-) True G18825
TU21817 lncRNA downstream 164862 19370456 ~ 19371565 (-) True G18720
TU21778 lncRNA downstream 167483 19367990 ~ 19368944 (-) True G18686
TU21811 lncRNA downstream 181428 19354654 ~ 19354999 (-) True G18714
TU21800 lncRNA downstream 192658 19343449 ~ 19343769 (-) True G18704
TU21954 lncRNA upstream 22744 19561526 ~ 19561735 (-) True G18852
TU21955 lncRNA upstream 24600 19563382 ~ 19564405 (-) True G18853
TU21968 lncRNA upstream 44470 19583252 ~ 19583669 (-) True G18865
TU22007 lncRNA upstream 112377 19651159 ~ 19656415 (-) True G18895
TU22018 lncRNA upstream 122571 19661353 ~ 19663906 (-) False G18904
XM_021579881.2 mRNA downstream 53104 19474588 ~ 19483323 (-) True LOC110501969
XM_021579773.2 mRNA downstream 72189 19454043 ~ 19464238 (-) True LOC110501773
XM_021579701.2 mRNA downstream 72190 19452917 ~ 19464237 (-) False LOC110501773
XM_021579631.2 mRNA downstream 72191 19452917 ~ 19464236 (-) False LOC110501773
XM_036943822.1 mRNA downstream 194406 19340408 ~ 19342021 (-) False fam32a
XM_021581178.2 mRNA upstream 66382 19605164 ~ 19620194 (-) True LOC110502819
XM_021581383.2 mRNA upstream 91594 19630376 ~ 19633032 (-) False LOC110502937
XM_021581428.2 mRNA upstream 91594 19630376 ~ 19633033 (-) False LOC110502937
XM_021581316.2 mRNA upstream 91594 19630376 ~ 19633058 (-) False LOC110502937
XM_021581734.2 mRNA upstream 194087 19732869 ~ 19743641 (-) True LOC110503352
TU21090 other downstream 650775 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1141567 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1144894 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 1441489 18089880 ~ 18094938 (-) False LOC110497564
TU21902 other upstream 91711 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 1260338 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1546516 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1546516 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1546686 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile