RNA id: XM_021581178.2


Basic Information

Item Value
RNA id XM_021581178.2
length 845
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110502819
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19605164 ~ 19620194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGAGGAGTTGTGAACACTTTGTTTGGCTTCCGTTCGAGACAATCGTCGCCTCATGAAGTCGGCCATTTCTCCAATCACACACAAGGAATAGTTGGCGGGAGTGAAAGGGGAGGGACATTCGAATGTGTGATTCTCGAATTCGAACACATTTTCTACGTTAGGAAAGTAGCACATGCTAGCTACGAACTGTATGTGGCTACAAGAGAATGGCGGAAAGTGTTGCAGTCTCTGTCGCCCCCTTGGGACCCACAGAGTCGGAACCAGAGCGATGTGAAGGCGAGGAAGAGGCACGGGGGAACGAGGCTGGAGAGAACAACCAACAAACTGGGCCTGTTGCAGGAGCTCCCCAGAACCGTCTCGCGAAGTTACCGCTATCCCGCATCAAGGCATTGATGAAAGCCGACCCAGACGTGTCCCTCGCCAGTCAAGAGTCTGTGTTTATCATAGCTAAAGCCACAGAACTCTTTGTTGAGATGATTGCCAAAGATGCCCTGGTGTATGCCCAGCAAGGAAAGAGGAAAACTTTGCAGAGGAAAGACTTAGACAATGCAATCGAGGCCATAGATGAGTTTGCTTTTCTGGAAGGTACTCTCGATGCCTAGACACTCTCAGAAGAAAGAAGGCAGTTCAAAGATCAGAGGCATTTGGAAACCAGACTGACCTGTCTTGCTTTTGAAGTGACATCACTGAGTTGGTAATTACATATTTGAGAAGGTTTTGGTACTGGTTGCAAGGAGTTCCCTTCctgaacatgtacagtatatactgacaTCATTGATGAtgacttttttttgttgtaagTAATGTGAGGTGTGTTGAAATAAATCATACAAATGTTTGTAAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03506 POLE4; DNA polymerase epsilon subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21968 lncRNA downstream 21495 19583252 ~ 19583669 (-) True G18865
TU21955 lncRNA downstream 40759 19563382 ~ 19564405 (-) True G18853
TU21954 lncRNA downstream 43429 19561526 ~ 19561735 (-) True G18852
TU21899 lncRNA downstream 66446 19536427 ~ 19538718 (-) False LOC110502382
TU21900 lncRNA downstream 66446 19536427 ~ 19538718 (-) True LOC110502382
TU22007 lncRNA upstream 30965 19651159 ~ 19656415 (-) True G18895
TU22018 lncRNA upstream 41159 19661353 ~ 19663906 (-) False G18904
TU22022 lncRNA upstream 41159 19661353 ~ 19662002 (-) False G18904
TU22019 lncRNA upstream 41914 19662108 ~ 19663906 (-) True G18904
TU22017 lncRNA upstream 44118 19664312 ~ 19665665 (-) True G18903
XM_021580480.2 mRNA downstream 66382 19536427 ~ 19538782 (-) False LOC110502382
XM_021580403.2 mRNA downstream 66394 19536929 ~ 19538770 (-) False LOC110502382
XM_021579881.2 mRNA downstream 121841 19474588 ~ 19483323 (-) True LOC110501969
XM_021579773.2 mRNA downstream 140926 19454043 ~ 19464238 (-) True LOC110501773
XM_021579701.2 mRNA downstream 140927 19452917 ~ 19464237 (-) False LOC110501773
XM_021581383.2 mRNA upstream 10182 19630376 ~ 19633032 (-) False LOC110502937
XM_021581428.2 mRNA upstream 10182 19630376 ~ 19633033 (-) False LOC110502937
XM_021581316.2 mRNA upstream 10182 19630376 ~ 19633058 (-) False LOC110502937
XM_021581734.2 mRNA upstream 112675 19732869 ~ 19743641 (-) True LOC110503352
XR_002470477.2 mRNA upstream 209131 19829325 ~ 19832397 (-) True LOC110503449
TU21090 other downstream 719512 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1210304 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1213631 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 1510226 18089880 ~ 18094938 (-) False LOC110497564
TU21902 other upstream 10299 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 1178926 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1465104 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1465104 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1465274 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile