RNA id: XM_021581383.2



Basic Information


Item Value
RNA id XM_021581383.2
length 926
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110502937
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19630376 ~ 19633058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATGGCAGCTACTGTATAAAGCAGTAGGGAACTCAACAAGACAGAGAAGACAGGTCATTTCTGCAAGGAGATTTTGTGTTTTGAGAAGTGGACCATAGAAGCAGTGACACCATGAAGTTCCAGGCTCTGTTCTTTCTCCTGCTCCTGGCATGCATGTACCTCAGCATGGCTCAAGGCTCTTATGGGAACTGCTGTCTGAAGCACGTTGCTGGCCTGAAAAAGAACACCAAGAGGAACGTGATGAGCTACAGGATACAGGAAACAGATGGCGACTGCAACATCAAGGctgttgtGTTCATGCTGAAGAAACGGAAGACTGTTTGTGCCAATCCCAGCCAGAAGTGGGTACAGAATCTGATGACTGTTGTTGATAAGCAGCAAAGCAACTAGCTTCCTGAGAAAAGAGAATGAGGGGATGTAGTTGAGCTGCTGCTTCGTTGGAGAGTCTTTTAACCAGTGTATGCCAATTTCCATATGTCAAGTGAAATGTGTGGGCAAATATATGACACATCATCCTGTAAGTAGAATGTGAGCTTCATCATTATATTACTCATTATATTATAGTTTGGCTTAATGAGTTTATATCACATGCTTTTGGGAGAATACCTGAGGTTCCATTGTTAAGGTGGCAATCCAGTAGCATAGCAAGACaactatactgtattactgtattcaCTGTTAGCATTAGATGACTAACCATGAATGGTGCCTGCTAGTAATGAGCCACTTGGCAGCTTagcattattgtgtgtgtgctgtgctgcctCTGCCTATACGCAGACTACATGCTGACTGTAGGGCCCCCGACCACTAAACTTTTATATAAAGCTACAATTTCTATTTTGATTTCAATCACTACTATGTCAAAACATTATTTGTATAAGTTCCCATTtgtaataaaaaatgtataaagtACAAAATGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21968 lncRNA downstream 46707 19583252 ~ 19583669 (-) True G18865
TU21955 lncRNA downstream 65971 19563382 ~ 19564405 (-) True G18853
TU21954 lncRNA downstream 68641 19561526 ~ 19561735 (-) True G18852
TU21899 lncRNA downstream 91658 19536427 ~ 19538718 (-) False LOC110502382
TU22007 lncRNA upstream 18127 19651159 ~ 19656415 (-) True G18895
TU22018 lncRNA upstream 28321 19661353 ~ 19663906 (-) False G18904
TU22022 lncRNA upstream 28321 19661353 ~ 19662002 (-) False G18904
TU22019 lncRNA upstream 29076 19662108 ~ 19663906 (-) True G18904
TU22017 lncRNA upstream 31280 19664312 ~ 19665665 (-) True G18903
XM_021581178.2 mRNA downstream 10182 19605164 ~ 19620194 (-) True LOC110502819
XM_021580480.2 mRNA downstream 91594 19536427 ~ 19538782 (-) False LOC110502382
XM_021580403.2 mRNA downstream 91606 19536929 ~ 19538770 (-) False LOC110502382
XM_021579881.2 mRNA downstream 147053 19474588 ~ 19483323 (-) True LOC110501969
XM_021579773.2 mRNA downstream 166138 19454043 ~ 19464238 (-) True LOC110501773
XM_021581734.2 mRNA upstream 99837 19732869 ~ 19743641 (-) True LOC110503352
XR_002470477.2 mRNA upstream 196293 19829325 ~ 19832397 (-) True LOC110503449
XM_021581890.2 mRNA upstream 203241 19836273 ~ 19838863 (-) True LOC110503510
XM_021582117.2 mRNA upstream 208489 19841521 ~ 19844225 (-) True larp6b
XM_036964853.1 mRNA upstream 232850 19865882 ~ 19890278 (-) False tmprss9
TU21090 other downstream 744724 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1235516 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1238843 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 1535438 18089880 ~ 18094938 (-) False LOC110497564
TU23634 other upstream 1166088 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1452266 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1452266 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1452436 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 1452436 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile