RNA id: XM_021581734.2


Basic Information

Item Value
RNA id XM_021581734.2
length 3977
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110503352
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19732869 ~ 19743641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGCTCATTCTAAGATGAAGTTATGGAAGTGTGCCACCATCGCCTTGACTCTTTGTGGTACAGCACTGTCCTTCTTCCTCACTAGAATCATGGTTCCCACGCCGCCGCATCACTTCCTCTCCTGGGACTGGTCTTCACCGCGGACATCAGACTccgcctccacctccacctcctcctcctcctccaactctTCTTCCTCCCTGATCGGACCTCATCGCAAAGCGCGGTCGACAGATGGCATCAGCAACATTTTGACAGAATTCATGCACATGTTCCAGAGCTTTACAGAGGGGGAGCTGAAGAAGGTGATCGGGACTCTGGtggagaagaaggcacagcaggAGGCCAGGCAGGAGGCTCGGCAGAGCAAAAGGACTAAACGAGCTAAGAAAGCATCGAAGCCATGTTCCCTGCGGGAGGTGGAAGTGACTGTCAGTGAGCTGGGTCTGGGCTACTACAGCGACGAAACGCTGCTCTTCAGGTACTGCAGCGGGAACTGTAATGCTAGCCGCCGCAACTACGACCTCATACTGGAAAAATGGACGAGGAAAGGCATCTCAAAGAGGGAGAGGAGCCCCTGTTGCCGGCCCAAGGAGTACGATGACATTTCCTTCTTGGACAACAGTAACAGATACCAGGCGCTCCACGAGTTTTCTGCTCTAGCGTGCGGTTGTGTATAACACCTAGATGGTGACCATTTTGGCTTTCCAGATACTGTATCGAACATGGGAAAcgcaacaactactgctacaaaaaaaaaaacaggagtaCACAAGAATAGATCCCTACAGTATGACGCCAGGGAATACGGACATTTGAAACCACCATCTATTCTACCATCTGTTCATTAATTTTGTTTGTTTAGCTTTCTTTGCCTTTCATGGGATATTTCTCTGTTGGTTTATACATTGTATGTCCTGGGATTATACATTTGTCATCATGGGGCAATCACAGTTAAAGTAACGATTTGTTTCTTGATTGTGGACTATGTAGCAATGCCTCCACTACCAATACAGAAGACCAGCTAAGGTATAACTAGTGCATTGTACACTGCAAGTCTGTTCTTATACTACACTTGTAAGAGGCCTGGTTTATTTTTTCAGGAATTAGTGTGTAGAAGTGTGTACATGGAAAATAGTAGAATAATATAGGGAATGCCAAGGAAGACATGTACAGTATACAAAAGGATGAAACCAACATGAAGCTACCACAGTGTGCTTCTCCACAACTTCTTGATCTGCACCATTGATAACGCATGAGGTATCACGAAGGCAAGTCCAATGGAGCAGCAACAGCAGTACTAGGAAAGACTAGAGGCTTGGAGAAACATGTATAGCAGTCTTCACTTCATATTATGTGTATAGGCACTCCTTCATATCACAGGTAATGAACTGAATCATGACATTTTTAGCCTTCATCAGTAACTTTGAAAATCTACCTCATTTATGTTGAACAATAATGGACAACATCCGATGTAAAAACACACGAACATGTTCTTCAACAGCTTCCTCTGTATTCATCACTAGGACCAGACCAAAAGGAGATATTTTAGTAATAAATAATGGCCTATATTGGCATATGAAGCTGTAGGGTAAAACAACAAAAAAGAGCTAGCCCACAGCCTGTTCTATGCATGCTAAATATAGAGACGGTATGGGTGATTTAGGCTTAATGACAACAGCTTGTTAATCAAATGGAATGGCTATAGCTGTATAAATAAGCCAGTTCCCAGAAAGAACAATCCAGCAGAAAAACAATGTGCTATCAAAAATCCCTATCCTTCTACAGCTAGATCACTATGAGCTCATGAAATATAACTTCAATGGTAATACAGCAATGCAGTCTTGTTTGATCATGTAGACAGAGTGGTGCATTAAATGGGTGCCTGCTGCATTGTAAATGTGACTGCGAGGGATTGTGCTTTAGTTTTACCATGAATTAGCCTCTGCAAATCCATACCATTTGCGCAAAACCCGCAATAGACTACCTTAATCCACTTACCTCCTTTATAACTGACTTGGCCAAAagcactgagaaagagagagaaatacaagcCACCATGCAGCATTACTATTTTTTTGTCACTAGAACACTGGAGATGTAAAGGAGTAGCCATTGGTTTTAACCACACATGTTACCAGAACAGGTTTGAGCAGCAATACGTGTTAATATGTGTTGCATCAAACACAGTTATTTTCTGAAAACCAAATGGAAATCATTCATTAGATTAATTGTGGCCAAATATATTTGTAATAAGATTAAAATAACACACCTTCGAAAAGTTCTAGAGCAATTCCAAAAAATGTACTCGAATGACATGAGTTCAGAAAATATCTCTCATTCTTGAAAACTGTAAACAAATAATTATAGACTGAGTGCTGTATCGAAATTATAGATTTTACCTGAGCATCTACAGTGTAGTGTGAGGTACAGTTAGGTTTAAATGGAATAGTCTGAAGCCAGTGGGAGTATCTCTTCAAGAGCCACTGAACACGCTGATTGGCAagtgtgtttttctgttgctcaATGAGATTTCAGTCTGTGTTTTCTCAGTGTTCAGTGGTGAATCGGTGTTTTCTGACTGATTCTGCATTTGTTTGATGATGTTTGTCCCCCGTGAGAGACTGTAGACAGGAACGCCTATTTTACTTCTTCAAATCCCCAGAATGTATCTGAGATAACTCAAGGAATCTGTAATTAATTTTGATGTTTTTGTCGAGGATATTTTAGTTGTGCAATTTAACTAAGTGTGTTTGGTGCATTATTTCTCAAGTTAAAAAGATGTCTGACGTGTTGCCGTATGTAAACACAGTCGGagctgctgggcaggtctgtctcactgtctattATATTGGACAGAGAGCAATCACCACAGCTGTTCACCCCATGTTAGTGGGCAAATGGACATCGTCAAATCAAAATTCAACCTTCATTTACCCGTTTTAGACGAGACTGACTTCATGACCAAAATTACCCTATTTACACTTTGCAGTCAATTTTGGCAGTAGAAtaactgtttctgactcatatcgatgcaaCATAGGCCATTTTAAAAGGGTTCATTGCTTTTGAAAGGCAGTCGCTCTTTAAGTTAAGACCAATCAAATAATTAGAGCAGACAGGTAATTAAAGGCCCATGCTGGCGTTAAACCCAAGAAAACAGGCCTCCCCAGCCAGGGACCAAAATAGCCTCAAGACTAAATGTGCTTAAAATCCAAAGGATTCCACACTCTCTGAACAATCAGCACACAGACAGTCACTATGCAGGTTAGCTGTAGCTGCTGCTAGTGAGAGGATAATTATGCCTAGAGCTCTTCAAGCTTGAGGTGACATGATGCTATATAGTGAGAACCATTACTAGGTTTGTGCACTAAAATGAACGGGCTTTTAATGCCACCTTGCATGTATAGAAATGAGCATATCTCTGGCATGTTACAAATGCTCTACATTGTTGAGGACATCTCAATCAAATAATGCATTTTTTAAGGACTAATAAGACATGCAATTTAGTTTTGCCTGTTCAAATGGTTGACAATTTAAGAGAAAAGAGCAACTAGAAAACAAATTGTTGTCCTAATGTTGATGATATGTATTTGTCATTATATATTTTCATAACCCCTATATTTGCCATCACAATTTACTAAGACTACGCAGCGTTAAAATATATCTATGGGTTGAAATTCCCTAAGGATTCCTTTGTTTCCTCTCTTGGCCTACCTAGAATGCTCTCTCAAAATAAGAAGAGAATGTTTGGGAAATGACAAACGACAACCTACAGCTCTGGCATTGTTGGACTACGTTGACCAACTGCAGTAAAGTTGATGCAATGCATCTGTATTATAGATAATGTATATTTATTGGAGCTTAAGTTATGGTTTATTTATTTAGATAGAATCATAAAAAAAGAGGAACATGTTTATTTATTGAACTATTGGTGCCAATACTCTAAATATTCTAACTGTTGAATAAACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22040 lncRNA downstream 42676 19689929 ~ 19690193 (-) True G18922
TU22039 lncRNA downstream 43293 19689354 ~ 19689576 (-) True G18921
TU22036 lncRNA downstream 46464 19685524 ~ 19686405 (-) True G18918
TU22035 lncRNA downstream 47716 19684895 ~ 19685153 (-) True G18917
TU22024 lncRNA downstream 63347 19669298 ~ 19669522 (-) True G18906
TU22092 lncRNA upstream 7816 19751457 ~ 19751810 (-) True G18966
TU22107 lncRNA upstream 33356 19776997 ~ 19809300 (-) True G18981
TU22130 lncRNA upstream 68331 19811972 ~ 19812249 (-) True G19004
TU22132 lncRNA upstream 71142 19814783 ~ 19815136 (-) True G19006
TU22141 lncRNA upstream 85185 19828826 ~ 19829049 (-) True G19015
XM_021581316.2 mRNA downstream 99811 19630376 ~ 19633058 (-) False LOC110502937
XM_021581428.2 mRNA downstream 99836 19630376 ~ 19633033 (-) False LOC110502937
XM_021581383.2 mRNA downstream 99837 19630376 ~ 19633032 (-) False LOC110502937
XM_021581178.2 mRNA downstream 112675 19605164 ~ 19620194 (-) True LOC110502819
XM_021580480.2 mRNA downstream 194087 19536427 ~ 19538782 (-) False LOC110502382
XR_002470477.2 mRNA upstream 85684 19829325 ~ 19832397 (-) True LOC110503449
XM_021581890.2 mRNA upstream 92632 19836273 ~ 19838863 (-) True LOC110503510
XM_021582117.2 mRNA upstream 97880 19841521 ~ 19844225 (-) True larp6b
XM_036964853.1 mRNA upstream 122241 19865882 ~ 19890278 (-) False tmprss9
XM_036964798.1 mRNA upstream 122241 19865882 ~ 19890280 (-) False tmprss9
TU21902 other downstream 100252 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 847217 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1338009 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1341336 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 1637931 18089880 ~ 18094938 (-) False LOC110497564
TU23634 other upstream 1055479 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1341657 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1341657 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1341827 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 1341827 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile