RNA id: XM_021582117.2


Basic Information

Item Value
RNA id XM_021582117.2
length 2204
RNA type mRNA
GC content 0.52
exon number 4
gene id larp6b
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19841521 ~ 19844225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATACATCAGACATGTCATTATCCAATGGTCAAGTTCTCTCAATTGTGACGTAAGGGGCACCAGAAATTAGAATTTCTAAAAATATTCCATGTCAACATGTGCGGTGGAGACCGGGGAAACGTCGGGCAAAGAGGATATCAGTCTCACAACATGTCTTCACCAACTGCAGACGTCTTCCGATGTGGCTTGCAAATGTATCAGCTGTCCCCAGATTCAAGGCGGCTTGGGTCATACACAGAGGACAGAACATATGATAGTTTGGATGGAAGTTCCACAGAGTTGACTGATGTGTTTGAAGAAGAGGACTGTATTCAGGATGAAGGCTGGAGTACCCCTGTTGTAGACCTGAAACAGAAAATTGCAGCTCGGCTAGAAAACTATCTTACCAATGAGAGCCTGTCTGAAGATGCCTTTTTACTGAAACATGTTCAGAGGAACAAGAAGGGCTACGTCAGTGTGAAGTTACTAACTTCATTCAAAAAGATCAGGGAGCTCACACGTGACTGGCGAACCACTCTGGCTGCGGCTCGCACCACGCAGCAGCTGGAAGTCAACGAGGAGGGAACCAAGGTGCGACGGAGGGACCCAGTGCCCGACTGGCTACTGTGTGTCCCCACCAGCAAGCTGCTGCTGGCCTGGAACCTCCTGGGAGGAGAGGACAACGATGAGGAGAGCGTAGCCCCGGGGGTGGAGCAGCAGAGCCTGATGGAGACAGCTATGAGACTATTTGGCTGCCACGGCACCATCACGTCCCTCCGCATCCTGCGCCCAGGGAAGGAGATCCCTGCCGAGCTCAAGAGGTATGCAAAGAAACACATGGAGCTGGGGCGTAAGGTGTGTGCCGTGGTGGAGTATGAGTACCTGGAGGGGGCACGGCGGGCCTATGAGGCCCTGCAGGCTGAAGAGCAGCTACAGGGGAACAGGGCTGTACGCGTGGTACTCCTAGGCAGCAGGGGCACCAGGAAGCCAAGGGGCAGCCAGGACCGCACAGAGGAAGAGTCTGAGGACGGCATCGAGAGTGTGTGCTCGAGGAAGCCCAACCGCAAGGGCAGACGCTACCCGGGCTACTCCCTGGAGGACTCTGCCCTCTACAGCTCATCTGAGTCAGACTTCGCCCCCGCCTCGCCCAGGCCCAACCGCAGGGTCACACGACCTCAGGCTCTGTACGGCAGCCCCCTGGCCATCCCCCGGGTGTCCTCCTTCCGCTCAGACCCCTACAAGAACCCAGTTTGTAGCCCTGTGGGGAGCCCCCTCCTGCCCCGTAAGCTGTTCCCCAATGGCCACACTCCGTCCCCGCTGGCCGCTCCAGAGATCAGCAGCAGCCCTGTATCCAGTGGCAATGGAAGCTTTGGCAGCAGGAGCAAGTGCTCCGGGGACTATTCCCAGGAAAGTTTGGGCTTTGTGGGGAGCCCCTGGGTCCAGCGTCGGAAGACTGCCGCCCAGACATTTTTTCCTGACAAAGGTGGGCCCCTCTCGCCTGGCCTGCCCAAGAGGCCACTGGGCGTGGTGGATGTGCTGCGCCAGCCGCTTGGCCCTGATGGCACTAAAGGCTTCTACAACTGCATTGGCAGGGGGAAGCTGGTAGTGCAGCAATGATAAAGCCTGGCGAAAATTACCTCTGCCCAAAGCAAGGAATGATTTGATCTTAATGTAACCACCATATAGTGTTTACAATTACTTTTGATTGTCTCAATGTTTATCTAaatgaaatggggggggggggggggtcacattgGTCAAACTTATGAAAATGTTATTTTGTATTGATTAATAAAGATTACGATGTACTTTCAACAGTTCTTATGTTATTTCCCTTTATGCCCAGTATGGACTAAAATTATTCCGACTATGCAATATCTCAGTACATTACTATTCTGGGGTGAAACATGGTTTCATTCCTGCCTCAACTGCTAAAGACACACGCATATATGGTTATCTGAACTTCCCTAGCATAACTTCTAATGTATGCGCCTCCACCAGGATAATGTTCTCAATGTGTCAAGTCCCACAGGGGCAATGGCCACTATAGTCTGTGTCAGGCACCATTCCCTGTGCCTGCATGTCTTCTAGTGGGCTATGTTCTACAAAGATagtattgtttttttctctcacactgccaagttatttttccaaataAATGGTGTATGAATAATTTATTCATGTAGCAGACTGCCCCGTTAAAGCATTCCTCATTGAACAGAAA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K18733 LARP6; la-related protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22159 lncRNA downstream 37 19839837 ~ 19841484 (-) True G19030
TU22141 lncRNA downstream 12472 19828826 ~ 19829049 (-) True G19015
TU22132 lncRNA downstream 26385 19814783 ~ 19815136 (-) True G19006
TU22130 lncRNA downstream 29272 19811972 ~ 19812249 (-) True G19004
TU22107 lncRNA downstream 32221 19776997 ~ 19809300 (-) True G18981
TU22161 lncRNA upstream 1407 19845632 ~ 19845952 (-) True G19032
TU22163 lncRNA upstream 9900 19854125 ~ 19854347 (-) True G19034
TU22167 lncRNA upstream 12744 19856969 ~ 19857241 (-) True G19038
TU22220 lncRNA upstream 20453 19864678 ~ 19865605 (-) True G19089
TU22223 lncRNA upstream 22772 19866997 ~ 19867207 (-) False tmprss9
XM_021581890.2 mRNA downstream 2658 19836273 ~ 19838863 (-) True LOC110503510
XR_002470477.2 mRNA downstream 9124 19829325 ~ 19832397 (-) True LOC110503449
XM_021581734.2 mRNA downstream 97880 19732869 ~ 19743641 (-) True LOC110503352
XM_021581316.2 mRNA downstream 208463 19630376 ~ 19633058 (-) False LOC110502937
XM_021581428.2 mRNA downstream 208488 19630376 ~ 19633033 (-) False LOC110502937
XM_036964853.1 mRNA upstream 21657 19865882 ~ 19890278 (-) False tmprss9
XM_036964798.1 mRNA upstream 21657 19865882 ~ 19890280 (-) False tmprss9
XR_005040019.1 mRNA upstream 75340 19919565 ~ 19932387 (-) False LOC110504151
XR_002470564.2 mRNA upstream 75340 19919565 ~ 19934801 (-) False LOC110504151
XM_021583115.2 mRNA upstream 252173 20096398 ~ 20117301 (-) True LOC110504304
TU21902 other downstream 208904 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 955869 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1446661 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1449988 18390123 ~ 18391533 (-) False LOC110497762
TU19904 other downstream 1746583 18093155 ~ 18094938 (-) True LOC110497564
TU23634 other upstream 954895 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1241073 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1241073 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1241243 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 1241243 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile