RNA id: XM_021583115.2


Basic Information

Item Value
RNA id XM_021583115.2
length 1434
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110504304
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20096398 ~ 20117301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACAGGAGAGCGCATGAGCAACAACACATGCTACCAGCAGGAGCGCACATCATAGAGCACGAAGTTTGACCAACCCTGTCTCTTCTAACAATAACGACGTGTTGTCACCCCTCAAGAACTCAGGTTGTGTTTTAAGGGGAGGAAGCAGTGAAGTGGAGGAGAAGCAGTTAGTCTTGGGTTACAGACCTGGATTAATGCTTGGCTTAGGACACCAGAGGAAACCAACTCTTCTCTCAGAGGATCCTTTTCTTCAACACAGTAATACCCTACCGAGGACTCAGGACAGTTGACTGTTAACATCAGTGACTGTTCAAACCCATTCCCATtcacagacagacggacatcTTTCACCACGTATTTAATCCTAAAAGTACACACTATATAGGGAGACCGCAGGGTGTTAGACCCACACTGGGCTATAGACATAGCTCTGCTTTTCAAACCCACTAACTGCCCCTTCCCTAGAGAAAAGGCTTACTTAGCATCTAATGCTGTGCGTTGCTTTCACATTCAGCATCATTGATCCACTGATCCCCACTCTGATCTGATTAGCCTTTTAGCCTCTCATATTGTTTacgcaaatatatacacacacacaggcgcatgCTGCAGTCATGCTGTCAGCTCGTTTACACATCTACGTCTCGCCTGGCTGTGATTAGCATCCACTACAGACAACACCTGGCTATATCGCATCTGTACACAATTAGCTCCCATTGAGGAACCTGGGTAGTACTACTAGTACAGTACGCTGTTGccctgtgctgtactgctgtgttTATCCACACTGGCAGGTGCCTGTGTCATGTCCGGTCTGTCAAGGTggatgtctgtgtgagagagtggATACGACAGGGCTCTGATAAACACATGTTCTGTAGTCATCTACTACTGCCTATGGGTCGGTCACTGTGAGCAGAAGAGGTACTGGTActgatcatactgtctgtctatcacccTGTCAGAAGGGATCAAGATCAAATCTCTCTTGAAGAAGACACTTCATCAAAAAAAGACTAACCTGGATTAACAAAGCCTGAATAGAACATATCACTGTCCATCCGTCCCTCCGTACCCCTGTGGCCCACTACCCCCACCATCCAATTTGTGTGCCATTTCAGCCACCGGACCCCTTGGAGGATGAATGATGTCCCCACTCTGGACTATGAGCTGCTGCTGTCCCCTGGGCCCTCCCTCCCTGGGGCCCCCAGCAGTCCTCCTCTGGTGGGGGGTGACGCAGAGCAGAGGACGGCCTTTGCCTTCGTGGGGCTCCTCATGCTCTTCCTTGTCTTCCTGCTGGTGCGCTGCTTCCGCATCCTGCTGGACCCCTACAGCCGCATGCCATCCTCCTCCTGGACCGAACACAAAGAGGGTGCAGAGAGGGGGCAGTTTGACTACGCCCTGGTCTagacctgggtcgtgttcattaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22462 lncRNA downstream 1820 20094371 ~ 20094578 (-) True G19293
TU22426 lncRNA downstream 6798 20041899 ~ 20089600 (-) True G19266
TU22440 lncRNA downstream 40086 20055154 ~ 20056312 (-) True G19273
TU22318 lncRNA downstream 135810 19960227 ~ 19960588 (-) True G19181
TU22283 lncRNA downstream 165338 19930832 ~ 19931060 (-) True G19146
TU23262 lncRNA upstream 16284 20133585 ~ 20134663 (-) True G19953
TU23268 lncRNA upstream 25046 20142347 ~ 20142610 (-) True G19959
TU23270 lncRNA upstream 28054 20145355 ~ 20169899 (-) True G19960
TU23271 lncRNA upstream 35349 20152650 ~ 20153470 (-) True G19961
TU23278 lncRNA upstream 54451 20171752 ~ 20172041 (-) True G19967
XR_002470564.2 mRNA downstream 161597 19919565 ~ 19934801 (-) False LOC110504151
XR_005040019.1 mRNA downstream 164011 19919565 ~ 19932387 (-) False LOC110504151
XM_036964798.1 mRNA downstream 206118 19865882 ~ 19890280 (-) False tmprss9
XM_036964853.1 mRNA downstream 206120 19865882 ~ 19890278 (-) False tmprss9
XM_021582117.2 mRNA downstream 252173 19841521 ~ 19844225 (-) True larp6b
XM_021584354.1 mRNA upstream 62815 20180116 ~ 20186752 (-) False LOC110505227
XM_021584517.2 mRNA upstream 63040 20180341 ~ 20185873 (-) False LOC110505227
XM_021584436.2 mRNA upstream 63040 20180341 ~ 20187417 (-) True LOC110505227
XM_036965841.1 mRNA upstream 88275 20205576 ~ 20209324 (-) False LOC110505456
XM_021584722.2 mRNA upstream 88275 20205576 ~ 20211949 (-) False LOC110505456
TU21902 other downstream 463781 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 1210746 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1701538 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1704865 18390123 ~ 18391533 (-) False LOC110497762
TU19904 other downstream 2001460 18093155 ~ 18094938 (-) True LOC110497564
TU23634 other upstream 681819 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 967997 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 967997 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 968167 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 968167 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile