RNA id: LOC110532081


Basic Information

Item Value
RNA id LOC110532081
length 2326
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110532081
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21686077 ~ 21733286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGCTCATAAAAATATTCAGCATTGTTTGTTGTAATGATAGGAGCTAGTTAACTAGTATTTAAATGTATACCGTTATGATAGCACATCCGCATCATTGGTCGTGTGTATTGACATGGTAGTATCGTAGTGTGTATAGACATGGTAGTGAACAAATGCATTTGCACTTTCCATGCATTTCAGTCTCGTGAATTTCATCAAAATGCATATGCATGTGATTGTGCATTTGTATTGCAGATCTGAGGATCCCTACAATGATTCATTGAAACTGGATGGACAGTTGTGCAGGCTTGGCAAGTACCCAGGATTTATTCAGAACATGGATGGAAGCAGAACATTCGATTACCCAAGCTTTGTAAAAGACCTCGTTGAAAATCTATCACCATACACCACATTCACAATTCATTATTACACTTGAATAATAGCAATTATGCAAACAGAACGTAATTACATGGTTTGTAACCAACAACCAAAGCACTCATCACAGCAGTTTCCAGGTGTCACAAGGACATGGCTAAGAAGGATGGAATAAGCCTGTATCATCTGAGCACATAGACAGAGAACCAAACATTCCCTCTTATCAGAGCCAAACTCTGTAGACCTGTAATATTGGACACCAGGTCCACTCACCTCTCTGGTCATACTCAAGCAGTGCTACATTGTCAGCAGGTTAAGGAGAACCTTCTGTTGCATTTCTGCAGTTGCAGCATCCCACATTTCAAAACATGAATCTGCATTTGTATTCATTGTTGGAGTATTGTCCGACCCAGGATATCCAGAAACATACAATACATAAGTATTAAAAACAGTCACATGGCTGAAAGGGGAAACCATGAGTGACGGGGACTTCCATGAACTCATGGACTATTTGGAGAATCGCCTGACCATGGACACCTTCATCCACCGCATCGACTCCACAGAAGTCATCTACGAGCCGCGGAGGAAGAGGGCCAAGCTGATTGGGAAGTACCTGATGGGAGACCTGCTGGGGGAGGGCTCCTATGGGAAGGTGAAGGAGATGCTGGACTCTGAGACACTCTGTAGGAGGGCTGTCAAGATCCTTAAGAAGAAGAAACTGAGACGCATCCCAAACGGGGAGCAACATGGCAAAAAGTATATTCAGCTGTTAAGAAGATTGAGGCACAATAATATTATCCAATTGGTCGAGGTTTTGTATAATGAGGAGAAGCAAAAGATGTATATGGTGATAGAATATTGTGTATGTGGAATGCAGGAGATGTTGGACAGTGTTGATGAGAAAAGGTTTCCAGTTTTTCAAGCTCATGGGTACTTTTGTCAGCTGCTAGATGGCTTGGAATATTTGCACAGCCAGGGAACAGTTTACAAAGATATTAAACCAGGGAATCTACTGCTGACGACGGACGGTGCACTAAAGATCTCTGACCTGGGTGTAGCGGAGGCGCTGCACCTGTTTGCGGAGGACAGGGCTCTCCTGCCTTCCATCCCCCAGAGATTGCCAATGGCCTGGACACCTTCTCGGGGTTCAAAGTGGACATCTGGTCTGCTGGTGTCACACTATATAACATAACAACCAGCCTGTACCCTTTTGAAGGGGATAACATATATAAGCTGTTTGAGAACATTGGAAAGGGACACTACAGTGTTCCAGAGGAGTGTGGCCCTCTGCTCTCTGGCCTGCTAAGAGGAATGCTTGAGTATGACCCTGAGAAGAGGTtctcaatacaacacattagacTACACAACTGGGTGAGGAAGAAACACCCTGCCATGGAACCTCTGGTGTCAATGCCCCCCAGTGCTGACGGGAGGGATGCGTGGTGTAGCATGACTGTACTGCCTTACCTGGAGCACCTGCACGGCTACACCGACCAGGATGATGATGAACTCTTCGACGGAGCTGGAGACATCTACTCTCAGGGTTTCACTATGCCAGGACGGGTGCATGAGGACGGGCTGGAGCAGAACGGGTACCAGGGGGGGTGTGTGGGGCTGGGGCTCAGGACCCTGTGTGTGaacgacacagagacagaccaggaccACTACCCAACCACCAGCAGAACCAGGTCCCGATCAGAACGcctctccagctcctcctccAACCCCTCACGCAAAGGAGTGTCCACCTACAGCTGCATCCGCAAGCTGTCCAACTGTAAGCAGCAGTGGGAACAGCCCCCGAGTCCCCCAGCCCTGAACACACACTGGAAAGGTGAGGAGAAGGAGTAGTCATACAGGACACCTGTACAATGTTGTGGTCTACATCTAATTATAaattgggtggttcgagccctgaatgctgattggttgacaaccgtggtatatcagaacgtgtgacaaaacattt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0097009 energy homeostasis biological_process
GO:0060575 intestinal epithelial cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24488 lncRNA downstream 781 21684923 ~ 21685296 (-) True G21016
TU24486 lncRNA downstream 51054 21634545 ~ 21635023 (-) True G21014
TU24448 lncRNA downstream 68704 21575784 ~ 21617373 (-) True G20981
TU24445 lncRNA downstream 110620 21574847 ~ 21575457 (-) False G20980
TU24444 lncRNA downstream 110677 21574949 ~ 21575400 (-) True G20980
TU24540 lncRNA upstream 60120 21793406 ~ 21800722 (-) False G21063
TU24541 lncRNA upstream 66002 21799288 ~ 21800722 (-) True G21063
TU24538 lncRNA upstream 69246 21802532 ~ 21805075 (-) True G21062
TU24633 lncRNA upstream 147604 21880890 ~ 21902419 (-) True G21151
TU24638 lncRNA upstream 153363 21886649 ~ 21887089 (-) True G21155
XM_021588545.2 mRNA downstream 81648 21587517 ~ 21604429 (-) False LOC110508066
XM_021588588.2 mRNA downstream 81648 21587517 ~ 21604429 (-) True LOC110508066
XM_021587980.2 mRNA downstream 120354 21535882 ~ 21565723 (-) False LOC110507736
XM_036947495.1 mRNA downstream 317189 21366154 ~ 21368888 (-) True cirbp
XM_036948335.1 mRNA downstream 317190 21365215 ~ 21368887 (-) False cirbp
XM_021589510.2 mRNA upstream 377718 22111004 ~ 22203625 (-) True LOC110508721
LOC118966627 mRNA upstream 492919 22226205 ~ 22231598 (-) True LOC118966627
XR_002471392.2 mRNA upstream 659692 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 659692 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 701389 22434675 ~ 22437595 (-) True LOC110509244
TU24399 other downstream 138304 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 596827 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 648584 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 1106559 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1890740 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 2089414 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 2489621 24222907 ~ 24226490 (-) True G24542

Expression Profile