RNA id: XM_021589263.2


Basic Information

Item Value
RNA id XM_021589263.2
length 4110
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110508592
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21809564 ~ 21911516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAAGGCGAGGAGTCCGCACCTAGTGTTCCTACACGCGCCACAAACTGTGCTCTGTTATGCCAGGGAGATGCTGCTGGCGGTGGCGCCTCAGACTACAGGGCTGAACAGGACTCCACAGGAGCCACAGGAACAGCGCTAACCGGGTTGGCTACTGGTTGGACAGGTGAAGGCATTAACGGTATGATATGCAACAAAAGCGGAGATTGCAGAAGGGACCCCAACATTTCTGGGAGCCTGTCCTCCATCATATTTAGGCAGGAGAAGCAGACAGCAGGAATAGTTGAACCCGACGACGGGAAAAGGCAGTCTAGATGTAATTCAAGAGTCGCCAGCATGGACGGTTCTATTACCTCAGCGGGGTCCTTAGCACAGGGGCAAGGGACCGAGGTGGCCGGGGCAACAACTACTGCCACTGTGAAAAAGGACCCCAGAGTTTCCTTCTCAAATGCCCCTAGTAGAAAAGCATCGTCCTCTGTGCAGAACCAACAGAAGATGAATTCTGTCTCAAGTTTTAAATCTGAGGATATATCCCAGATTGTGACAGATGATGGGGAACCAAATGACAATCGGACATACATGCAGCGGCAATTTAGTTCCATGCTTCAGCCTGGAGTTAATAAATTTTCACTGCGTATGTTTGGGAGCCAAAAAGCTGTTGAAAAGGAACAACAGCGCGTCAAATCGGCCGGTAATTGGATTATTCATCCATACAGCGATTTCAGGTTCTACTGGGATTTCACCATGTTGATGTTCATGGTGGGCAACCTCATCATCATCCCAGTGGGGATCACCTTCTTCAAGGACGAGACCACCGCGCCCTGGATCATCTTCAACGTGGTCTCTGATACCTTCTTCCTCATGGACCTGGTCCTCAACTTCCGCACAGGCATTGTTTTAGAGGACAACACTGAGATCATCCTGGACCCCAAGAAGATCAAGAGGACGTACCTGAAGACCTGGTTTGTGGTGGACTTTATCTCCTCCATCCCTGTTGATTATATCTTCTTGATCGTGGAGAAGGGGATCGACTCTGAGGTGTATAAAACAGCCAGAGCCCTGAGGATCGTGCGCTTTACCAAGATCCTCAGTCTGCTGAGGCTGCTCAGGCTGTCCAGGCTAATTCGCTATGTCCACCAATGGGAAGAGATCTTCCATATGACCTATGACCTGGCCAGTGCAGTGATGCGTATCTTCAACCTGATTGGTATGATGTTGCTGCTGTGTCACTGGGATGGCTGTTTGCAGTTCCTGGTTCCCATGCTGCAGGATTTCCCCCAGGACTGCTGGGTCTCCCTTAACAAGATGGTGAATGACTCGTGGAGCGAGCTGTACTCCTTTGCCCTGTTCAAAGCCATGAGTCACATGCTGTGTATCGGTTATGGGCGCCAAGCCCCAGAGAGCATGTCTGATATCTGGTTGACCATGCTCAGTATGATCGTGGGAGCCACCTGCTACGCCATGTTCATCGGCCACGCTACCGCCCTTATCCAGTCCCTGGACTCATCCCGGCGCCAGTACCAGGAGAAGTACAAACAAGTGGAGCAGTACATGTCTTTCCACAAACTGCCAGCTGACTTCCGACAGAAAATCCATGACTACTACGAGCACAGATACCAGGGCAAGATGTTTGATGAGGAGAGCATCCTGGAGGAGCTTAATGAACCACTGCGGGAGGAAATTGTCAACTTCAACTGCCGTAAGCTGGTGGCGTCCATGCCCCTGTTTGCCAACACCGACCCCAACTTTGTGACGGCTATGTTGACTAAGCTCCGCTTTGAGGTCTTCCAGCCTGGAGATTACATCATCAGGGAGGGCACCATCGGCAAGAAGATGTACTTCACCCAACATGGTGTGACCAGTGTTCTGACCAAAGGAACCATGGGCATGAAGCTCTCAGATGGATCCTATTTTGGAGaGATCTGTCTGTTGACCCGAGGCAGACGGACGGCCAGTGTGCGAGCGGACACGTACTGCCGTCTCTACTCCCTGTCTGTGGATAACTTTAATGAGGTGCTGGAGGAGTACCCCATGATGAGACGAGCCTTCGAGACTGTGGCCATCGACCGACTGGACCGGATAGGGAAGAAGAACTCGATCCTAATGCACAAGGTTCAGCATGACCTCAATTCGGGCGTCTTCAACAACCGGGAGAACGAGATGATCCAGGAGATTGTGAAATATGACCGTGAGATGGTGCAGCAGGTGGACCTGCATAGGCCACGTGCCATGTCCATGTCCAACCCACCCACACATGGCGGCATCTTCACCCCCCCTGGCCCTCCCCAGAGCTCAGCCATCGCCACCCTCCAGCAGGCTGTGGCCATGAGCTTCTGTCCCCCCGTGGTAGGCCCTCTGGCAGGGGGTGGGGGCCTGCAGTCCCCCCGGATGGTGCGGAGGTTCAAGGTGATGCAGAATGTATCCAGCCCAGTGCCAGCCTCCCCTCCCCCCCAGACCCAGCAGACCATGCATCCCCAGCTATACGCCAGTGGTGCATTCGTCGCGGCCCTCTCCAGCCCCCCCATCCAGAGCCCCTTAGCGGCTGGGGGACGGACATTCCAGTACGGGCCCTCTTCTGGCTCCCAGATCTCCCTGGTTCAGAAAGTTGTGCCCAGCCCCACACACAGGCCCAACACCCATAACAGCACCCGGTCTCTGCACATGAGCAGTCTGGGTCAGAATGCCAGGGCACTGTCCGCCTCTCAGCCCTCCCTGCCCCAGGGAGGGGCTCAGCCCGTGGCTCCCTGCCCATCACAGTCCGCCCGTGTCTCCTCCACCTCCATCGGGCCCCCTCAGGCCCCCTCGGGCAATGCAGGGGTCAGGAGCGCTATGACTCATAGGATGGTGCTTCCCCACCAGATGTCTGCAGGGGCGTTCCCTCTAGCCTCCCTCCCGGGGACTGTTACATCGCTGGGGATGGGCATGGGCATGGGAGTGGGCATGGGGACAGGCTTGGCACCAGCCCTGCTGGACTCAGGATTACCCAAGAGTGAGTTTATAGCCAGCCTCCCTGAGACAGACCGTGCTAGATCGAGGCTTTCTTCCAATTTGTGACCTTTATTAGATTCCTGCAGAGCCAGTGCTTTTTGGTTGTGGGAACTCTAGTCGTTTCTTCCTTCTACCCTATAATTCTCCCTGTCAGGCGGGGCTAAATCTGACTTAAATAATGTGTGGTGTGTGACTGGtgatgacagggagagagagacaagagctGATGGAAAATGTATGACTAACAATATGAAGTCTGTATACAGAGTTATTGTCAAAGATGGGATGTTTCTACTCCATCCACAGACAGATACTGACCATACTTAATGGTAGCACCTTGTCCCCACATCTCTTCTCCTTTATTTTCTGTGTTTACTGTAACCATATTCAACATACATAACATCTGTCACCCACTATCTATATACTCCCAACAATACAAACTGGCTGGGACAAGAAGAAAATCTGAGACCTGCTTCAGATGACAACGATGACATTCACACTTTGCAGAAGTGTTCTGAGATTTCCTCTTTTGTCTGTGGACCGGCTTTAGCACAAGTTCTACTCATGCCACCGTAATATTGTTTcagaaaacaagaaaatgctaaatgttatttttttcccACACCACATCTTAAATGAATGCATTCAAAGGCTATAAAGGGAATTGTTtgacatttgtatttttaatcgAGACTTGTACAAACACAATATGGCCTGGGATTAGTAATATATCACTGAAGAAAAGAAAACGATGATTGTAACATTTGAAGCCATGCACTTGGTCCATAAGTGTGTGTATGGGTATAAGTATGACTGAGTTTCTTCATAGGAAATTCATATAATATATaactcatcccccctctctcaaaTGATCTTTGCAGAAGATGGTGGAGGtatgtttaattttttttgctATGGAATCTACCATATCATACATGACGTTCCATTCTGACTTTGCCTTTTCAAAACACTACAGCTTGGGATTAAGTGATACAGTTTCAATGAGGTCATCCGTCCCCATAGGATGATGCGTATGCATGTTGATATGGGTTATGAGTCACATGAATATCAACATACTGTAAATCAACATACTGTATTTCAATAAACCCTGATGGAATTTCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24293 lncRNA upstream 44377 21762239 ~ 21765187 (+) True G20848
TU24292 lncRNA upstream 47130 21759701 ~ 21762434 (+) False G20848
TU24247 lncRNA upstream 110279 21694253 ~ 21699285 (+) True G20810
TU24237 lncRNA upstream 125266 21683395 ~ 21684298 (+) True G20800
TU24236 lncRNA upstream 172203 21635497 ~ 21637361 (+) True G20799
TU24688 lncRNA downstream 27607 21939123 ~ 21939329 (+) True G21203
TU24695 lncRNA downstream 36672 21948188 ~ 21948544 (+) True G21210
TU24699 lncRNA downstream 41015 21952531 ~ 21952872 (+) True G21214
TU24715 lncRNA downstream 51423 21962939 ~ 21963157 (+) True G21229
TU24786 lncRNA downstream 140569 22052085 ~ 22052352 (+) True G21299
XM_036969779.1 mRNA upstream 6661 21792456 ~ 21802903 (+) False LOC110508526
XM_036969893.1 mRNA upstream 6661 21792539 ~ 21802903 (+) False LOC110508526
XM_036969836.1 mRNA upstream 6661 21793376 ~ 21802903 (+) True LOC110508526
XM_021588935.2 mRNA upstream 24320 21779741 ~ 21785244 (+) False LOC110508358
XM_021589012.2 mRNA upstream 24320 21779913 ~ 21785244 (+) True LOC110508358
XM_021589385.2 mRNA downstream 113113 22024629 ~ 22107857 (+) False LOC110508655
XM_036970165.1 mRNA downstream 113130 22024646 ~ 22107857 (+) True LOC110508655
XM_021589846.2 mRNA downstream 300816 22212332 ~ 22226104 (+) True LOC110508905
XM_036970373.1 mRNA downstream 369573 22281089 ~ 22422282 (+) True LOC110532091
XM_021590144.2 mRNA downstream 520794 22432310 ~ 22435150 (+) False zgc:110339
TU24207 other upstream 241376 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 1499666 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 1532669 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 1566689 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 1893732 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1626880 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1663076 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 1961505 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 1961505 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2593139 24504655 ~ 24506116 (+) True ccl4

Expression Profile