RNA id: XM_036970165.1


Basic Information

Item Value
RNA id XM_036970165.1
length 3090
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110508655
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22024629 ~ 22107857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGGTACCCTCGCTCTCGTGCATACTGCTGAACAGAGCGTCTCGGGGACTGGTAAAACTTGTTTTGTTACAACCTCTAGACTATTGCCTACCCACTTGTGTTACCGACGGACCGATGCCTGTGTAACAGACCTTTAACGGAGTTTGTACTGAATGGAATAATATCTCTGGCGTCCAAGTTCTGAATCTGATGCGGTTTTCACAAGTGTGGGATTTGTAACACTGCGCTGGTGTGACATCGTTCGCATGTAAACCGATTGAGCAGGATTGACTCTTGGAAGTGGTCAAAAAATGGactactgttaatttttattcaCAATGGGATTAAAACTATTTATTTTCCTCGGTTTATTCTGCGTCACCTCAGTTTTAGGTTTCGGGGTTGATCCTGCTCTATGCATCAATGTTTTCGATGAATTGACGCTTGGAGAGGGTTTTGATGGAGTTACTCAAGTCCAGGGCTTCCACAGCGAGTCTCGGGCGTTCCACTTTCAAGGTTCGTCCAGGGAGGTGAAGGCTCCTGAGGATGTGTCTGAGCGGATGCTCCAGAAGCTGAGGGGCCGGAGGGAGTTCACCGTTGTGGTCACCCTGAAACAGGAGCACTTCAACTCTGGGGTCATCCTATCCATCCACCATTCTGAACAGAGGTTCCTGGAGTTGGAGAGCAGTGGGCAGCGCAATGAGGTGCGTCTCCACTACCGCACCAAGGGTCAGAAGGCCCACACCGAGGTGTTTCCCTACAGCCTGGCAGACGGACAGTGGCACAAGGTTTCTGTGGCTGTCAGTGCCTCCCACATCATACTGCACGTTGACTGCAACAGgaTCTATGAGAGGGTGGTAGAGATCCCATTCATGGACATCCCTGAGGACACAACCTTCTGGTTAGGGCAGCGGAGCAGCGCCCATGGCTTTTTTAAGGGTGTAATGCAGGACGTTCAGATATTAGTCATGCCTCAGGGATTCATCTCCCAGTGCCCAGATCTCAACCGGACTTGCCCAACCTGCAATGACTTCCACGGACTGGTGCAGAAGATCATGGAACTGCAGGATATCTTAGCCAAAACATCCAGCAAGAACGGCACGGTGCAGTGTGAGACTATCTCCTGCCCTCCCCCTCAGTGCCCAGCGGACACCACGCCTGCCTACGTGAAGGGTGCCTGCTGCATGGAGTGCCAACCTGTATGCCATTTCGGAGAAGAAGAGTTGGTGGAGGGAGATCAGAAAGCGGTGCATTATAACTCTGGCAGATGCCAGCTGTCTGAGTGCAGGGAGAGGACCATGCATCGGGTCGTCATGACTAGCCCCTGTCCTGAACTTAACTGTCCAGAGTCCGAGCAGGTCACCCTCACCAACAGGTGCTGCAAAGTCTGCAGAGGTCACGACTTCTGTGCGGAGGGTCACGGCTGTGTGGAGCACTCTGACTGTATCAACCTGGAGGCTGGGGCCTGCTGCAGCTGCAAGGACGGCTTCCGCCCTCTCCGAGATGACAACGCATACTGTGAAGATATCGATGAGTGTGCAGAGGGGAAACACTACTGCAGGGAGAACACCATGTGTGTCAACACCCCCGGCTCCTTCATGTGTGTCTGCCACACGGGTTACATCAGGATCGATGACTACTGCTGCACAGAGCATGATGAGTGTGTGAGCGGACTGCACAGCTGCGCCCAGAATGCCCTCTGTTTCAATACGGTGGGGGGACACAGCTGCTCTTGTAAGCCGGGATACACTGGCAACGGTACCATCTGCAAAGCGATGTGTGATGGCCTGTGCCAGAATGGAGGAACCTGCATCTCCCCTAATAACTGCATCTGCCAGCTAGGCTTCACAGGGAAGAGGTGTGAGACAGACATCGATGAGTGTTTTCATGGTTTCGTGGAGTGTGATGACAAAGCCATCTGTGTCAACTTGCCCGGGTGGTACCACTGCGAGTGTCTGGATGGCTACCACGACAACGGCTTGTTCTCTACTAATGGGGAGTCGTGCATAGATATCAATGAATGCAAGACGGGGAGGAACACCTGTGCCAATGACACGGTGTGCTTCAACTTAGAGGGGGGCTATGACTGCAGGTGCCCCCACGGGAGGAACTGCACCGGAGACTGTATtcatgacaacaaagtcaaacaCAATGGACAGATCTGGGTGCTGGACAATGATAGGTGCTCAGTCTGCTCTTGTCAGACTGGCCGGGTGATGTGCAGGAGgatggtgtgtgactgtgagaaCCCGACAGCTGATCTGTTCTGCTGTCCAGAGTGTGACCCTCGCCTCAGCAGCCAGTGTCTGCACCAGAACGGCCTGCTGACCTACGGCAGTGGAGACACCTGGGTGGAGAACTGCCAGCAGTGCCAGTGTCTGCAGGGACAGGTGGACTGCTGGCCCCTGTTGTGCCCCCATGTGGACTGTGAATTCACGGTGGTGCCCGAGGGCGAATGCTGTGCCCGCTGCGTCACTGATCCCTGCCAGGCCGACACCATACGCAACAACATCACCAAGACGTGCATGGACGAGCACGGCATCCAGCGCTTCAGCGGGTCCTCATGGGTCAAACACAGCACCGAGTGCACCCTCTGCCAGTGCAAGaaTGGACATATCTGTTGCTCAGTGGACCCCATGTGCCTTTAGTTCCTGAAGCTCTGAAGGCACCTCCCTGTACAGTGTTATCCATGTAAAAACAACCAGCGTTTTCCACCCTCCAGCCCAACTTCTTTATACCAAATACAAAACATGTATCATAGAACACAGATGGACTACAGTACCCACAAGCCCCCTCTGTGTTCAGCCTCACCAATCAGGGTGACCTGTGTGCATTGAGGAACACCCCCAAATCATCTGCAACACGACGCTGTAAAATACTATTATACTGGCATGAATGTGCTCGATGTAGAAACATTTTgctcatttatagactcttttaATGTCAATGATGTCCTAGATAGTGGTTGTTTTAGTGTAAGTTTCATTTGCTACACTATTAAAGTTGTCGATATTTTGTGGTCCTCTAGCATTATTTTCTATTCATCTTTTACATTTATTTCCAGGCTTGTTAATGTGTAATGGTGAATAAAGTATTTCAATTTACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24715 lncRNA upstream 61489 21962939 ~ 21963157 (+) True G21229
TU24699 lncRNA upstream 71774 21952531 ~ 21952872 (+) True G21214
TU24695 lncRNA upstream 76102 21948188 ~ 21948544 (+) True G21210
TU24688 lncRNA upstream 85317 21939123 ~ 21939329 (+) True G21203
TU24369 lncRNA upstream 137562 21886629 ~ 21887084 (+) True G20920
TU25037 lncRNA downstream 132034 22239891 ~ 22243715 (+) True G21528
TU25042 lncRNA downstream 141494 22249351 ~ 22249637 (+) True G21533
TU25054 lncRNA downstream 159898 22267755 ~ 22267975 (+) True G21545
TU25082 lncRNA downstream 208634 22316491 ~ 22316704 (+) True G21573
TU25087 lncRNA downstream 218573 22326430 ~ 22326650 (+) True G21578
XM_021589263.2 mRNA upstream 113130 21809564 ~ 21911516 (+) True LOC110508592
XR_005041163.1 mRNA upstream 197517 21819189 ~ 21827129 (+) True LOC118946025
XM_036969779.1 mRNA upstream 221743 21792456 ~ 21802903 (+) False LOC110508526
XM_036969893.1 mRNA upstream 221743 21792539 ~ 21802903 (+) False LOC110508526
XM_036969836.1 mRNA upstream 221743 21793376 ~ 21802903 (+) True LOC110508526
XM_021589846.2 mRNA downstream 104475 22212332 ~ 22226104 (+) True LOC110508905
XM_036970373.1 mRNA downstream 173232 22281089 ~ 22422282 (+) True LOC110532091
XM_021590144.2 mRNA downstream 324453 22432310 ~ 22435150 (+) False zgc:110339
XM_021590070.2 mRNA downstream 324461 22432318 ~ 22435150 (+) True zgc:110339
XR_002472098.2 mRNA downstream 512809 22620666 ~ 22623442 (+) False LOC110513869
TU24207 other upstream 456458 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 1714748 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 1747751 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 1781771 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 2108814 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1430539 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1466735 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 1765164 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 1765164 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2396798 24504655 ~ 24506116 (+) True ccl4

Expression Profile