RNA id: XM_021589510.2


Basic Information

Item Value
RNA id XM_021589510.2
length 3848
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110508721
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22111004 ~ 22203625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTTCCTTCGCCCTCGTGCGacaatgtttgcaaacacagaaaggggtATACGCATTCCCCTctgtatataaaaataaatatttgtatgCTCTATGAACATCACCCTGCCATCAGTGGGAAACTCGATGTGTTTGTTATATTGCAGTTACATTGCAATGCACTGATGGTATGCGCCAGTCGTGGGGATAGAAGCATCCAGCCATCGCGCGACTCTCCATCATCATCACACATAGAAAACTGCGAGCCGCTCCGGCGGTGCAAAGCAGCGCCTCGCTGCCCTGCCACGCCGCTGCATGGACAGCCAACACAATGGCAGAGGATTTGGGGGTGCATCTGTTTTTAGCAACAACAGATAGCATGGATAATCCCGCCTCAACCGATTCAGCTCTCGTCGTTACGATGATTAGAGCGCCGCTGTCGGCTCGCCGGGCATGATAGGCAGGAGAGAGAGCCGTGCGGGAGCGGGGCTTCTCGTTTTGACAGTACTTTTTGAGAGGGAAACGCAAAGAAGCGTGGAACAAGTGGACTGTGGCTTGGGGTCCTTCAAAATGGATATAGATCCCTGTTTGCGGTACTATTTCCAGCACCCCTGGTCTCGTCTGTTTGTGGCCTACCTCGTCACTTTCTGCAACTTCCTTATCTTTGCTGAGGACCCTGTCTCCCACAGCCAGACAGAGGCTCACATGATCGTGGTGGGAAACTGCTTCTCCTTCATAGTGAACAAGTACCCTGGTGGAGGATGGAGCGTCCTCAAAGTCATCTCGTGGCTGATGGCCATTGTCACCGGAATGTTTGCCGGGAAGTTCATATTCCACCGCAGGCTCTTTGGTCGATATCTGCGTCTGAAAATGTTCCGTGAGGATCACGGCTCCTGGATGACCATGTTCTTCAGCACCATcatcttcctcttcatcttctCACACATCTACAATGTGATCCTTCTAATGGCAGGAAGCATGGGgcCTCACATGGTGACAGAGTACATGGGTATCAGGAATGAGAGCTTCATGAAGATTGCAGCAGTAGGGACGTGGATGGGGGACTTTGTGACTGCATGGATGGTCACTGACATGATGCTCCAGGACCAGCACTACCcagactggggcaaagctgccagAAGGTTCTGGAAACAAGGCAACCACAGGATCGTCCTCTTCTGGACGGTCCTGATCACTCTGACATCGGTGGTTTTGTTGGTCATCAGCACTGACTGGATCAGCTGGGACAACCTGAACCGGGGATTTCTGCCCAGCGACGAGGTCTCCAGGGCCTTCCTGGTATCCTTCATCCTGGTCTTTGACCTGCTCATTGTTATGCAGGATTGGGATTTTCCTCAGTTCATGGGCGACCTGGATATGAACCTGCCTGGCATGTCCACCACTCAGCTCAAGTTCAAACTTCCTGTCTGCAAGAGCATCTTCAAAGAGGAATACCACATCCATATCACAGGTAAGTGGTTCAACTACGGCATCATCTTCCTGGTGTTAATCCTGGACCTGAACATGTGGAAGAACCAGATCTTCTACAAGCCCTACGAGTACGGCCAATACGTTGGTCCAGGGGAGAAGATCTTCACTGTGGAGGAGCCCAACACACTGGGTGACTTCAACCGCAGCACGCTCACCTACAAGTGGCGCTCCAGCCACGTGGACCCGCTGACCAACCGCTCGTATGTCGAACGGGACATGTTCCTGCATAGCCGCTACGTGGGTGCCAGCCTGGAAGTCAAGTGCTTGGCCTTCATCCCCAGCCTGGCTGCCTTTGTCCTCTTTGGCTTCTTCATCTGGCTGCTGGGACGTTTTCAGGACAGCGAGACCTTCCCGGAGGGCCAGGTGGACAAGACGTACGAGAGGATCAAGAGGAAGTCTCCATCTGAGTATAGTAAGGACATGGGACTCACGCCAGAGGAGGTGCACATCTCTATGAGCGAGGCGCTCAAACGTTCCGGAACCCCCATGCTGCTGTCGGTGGATGGGCATCATTTTGCTCTGCACTCTGCCACCTCCACCAACTCCACTTCGCCTGTTTCCATGGAGACCCAGGAGACGCATCCCAGCATTGTCATCGAAGGCACGGAGCCAAGAGAGCCGGCGGTTTCCTTTGATGTCGGCAAACTGTCACCGCCCTGACCTTACTGCCCTGAGGGGAAGTACTGCTATGCTtctactgacagacacacagcctggagggaggagagcagacacaggagagagaccaaaCTGAAACTCAATTTCAGTCTAGATCTTTTTCAGTCTGGGTAGATTTTGAACCCAACACTGATTATTCCTGGAGCAGGAGGATGTAGCTACAATGGCCACTTTGTTTTGCTACTGTGATATCCCTGATGGCATTTtatgattattatttatttgaattgtaaAACCTCTAAGCTGACACCAACACAATGACAAACAGCTTATTTTAACCTCCCTCACTGTAAAGTTCTATTGTCAACACGGTGCTCTCGCTAGATTTGACGTTTTTACAATATCAAGATGTTTTCTCTTTTATCGTGACATATTTTGGTGCCTATGTGGGGAACTATTTCTACAGTCGATGTATGACACAATGGTCATGGCTAGTTTATAGTGTACAACTTGAGTATTACAGTTGAAGAGGTGCCTTGATAAACCCATGCCCACTAAAGGACAGCAACATAGTCTATACCATAGGCAGCAAAACAGAAGACGTCTGATAATGTGTGTCTGTCTTGTTTATTTCAATGTTCCACTTCACAATGTTGGACAATGTTTACCCTTTCAGACTTTATCACAGGTTTTTGAATTCATTTGCTATCTTGATCATTCTTACATATCCCATCTTCATGTGCCTCTTCTCTTGTAGTCATAGAAATGACTAGATTGCTAAACATCGTTACGATGATGATAATACTATGACCACCTCTTCATTTTCTGGTTGTATTATCAAATGCAAGATAAAAGGCATAAGCTATTTTCAAATAACATTAAAAAGTCACCTCATGATCACCTATCTGGTCAAAATACTCAGATGTAATGCCAATTAGGTCAGAAAGGTCATTTGCCCTTGTTGGGGTAAATGTGCTTTTGttatagaaggagagagaagaacacCAAATCTAACTGATGCACCTTACCCATATCATATCCCCCAGCAGTATATGTACCACAAGTAAGACCTTGGTTTGAAGCCAGTATTGGGGTATGGATTGGTTTGAGAGAACACATAGAGAATGTGACCTCTTACAGCTGACAAGCAAAAGAGAGTGGGAGTTTTTAGTATTTATGAGAGTTATGAGAGTTATTATATCACATACGTTAAGTGTGCAACTACTGTATACCAATGCTCTGTTATTTAAGTGTTTTCTAACAAAGTGTTGTGCGTCTGAGtttgtgcgcgcgtgcgtgtgtatgcGTCAGAGACAGCGAGAGCTGACAATTCTGTGAAGAGGTCAATGTAGTTCATGTAAGTGGCGTATGGTCCTTGGTTCAGTGATCCCCCTTCTACACTTTACAGGTCAGAGTCCTCATTACAGCTCAACTTATTTCATTTTGGAGATACGGCTTCGCAACAAGGCAACAAATTGCTAAATGTATGAGGCAATGGCTAAATGAGTGTGTTTATCTCACTAGAAGTGATCTAGTGATATGTTTGTAAAATATTGTGCTTTGGTTGGAACTGAATGTTCCCCCTGCTGTTATACATGGTATTGTGATGCATAACTGACAGCTATTTTgcattcttgtgtgtgtgtgtggtttttaaACAAAGGATATCTCTTTTAAACATGTTGACGCAATAAATGTCTGCCGAGTAATGGTATCaataaaatgtatacattttgctACATACTAGGTTGCGGTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24709 lncRNA downstream 154523 21956271 ~ 21956481 (-) True G21223
TU24707 lncRNA downstream 155189 21954662 ~ 21955815 (-) True G21221
TU24697 lncRNA downstream 160042 21950710 ~ 21950962 (-) True G21212
TU24689 lncRNA downstream 171601 21939108 ~ 21939403 (-) True G21204
TU24666 lncRNA downstream 183126 21927636 ~ 21927878 (-) True G21183
TU25349 lncRNA upstream 8818 22212443 ~ 22215444 (-) True G21827
TU25424 lncRNA upstream 45208 22248833 ~ 22249067 (-) True G21900
TU25428 lncRNA upstream 49337 22252962 ~ 22253252 (-) True G21904
TU25437 lncRNA upstream 61591 22265216 ~ 22265429 (-) True G21913
TU25441 lncRNA upstream 64137 22267762 ~ 22267965 (-) True G21917
LOC110532081 mRNA downstream 377718 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 506575 21587517 ~ 21604429 (-) False LOC110508066
XM_021588588.2 mRNA downstream 506575 21587517 ~ 21604429 (-) True LOC110508066
XM_021587980.2 mRNA downstream 545281 21535882 ~ 21565723 (-) False LOC110507736
XM_036947495.1 mRNA downstream 742116 21366154 ~ 21368888 (-) True cirbp
LOC118966627 mRNA upstream 22580 22226205 ~ 22231598 (-) True LOC118966627
XR_002471392.2 mRNA upstream 189353 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 189353 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 231050 22434675 ~ 22437595 (-) True LOC110509244
XM_021590377.2 mRNA upstream 259770 22463395 ~ 22487546 (-) False LOC110509312
TU24399 other downstream 563231 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 1021754 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 178245 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 636220 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1420401 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1619075 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 2019282 24222907 ~ 24226490 (-) True G24542

Expression Profile