RNA id: LOC118966627


Basic Information

Item Value
RNA id LOC118966627
length 1297
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC118966627
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22226205 ~ 22231598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGAATACAACAAAGTCAGCTACATTTATTCCGAACCTCCACTATGGGGTTCAACGAAAATTCTCCGACTTCTTGGACCCTCAAGAGAGCTGGAAAGACGTTCTTGTTTCTATACACAAACCCACAGGGCAGCCGAAGTACTCTCAGGTACTCGCATTTAAGGTCATGTGCTGGTCATCTACTGTACTTCACTGATAGGACTGGTGGACATCTAACAGCACTGTGGGAGAGGTGGCATCTTGATGAGCCACAGGTTAATGGCTGCAGCCAGTATTCTGCTACAGGATTTCTTATCTATGATTTCACCCAAACATAAAAAACCTCCGCTCAACCATCCCCCAGCCACATCCCAGCCACCTGTGTCTCCAGGGGGAAAAGAGACAGTAAACAACACTGAAACCAGAACCTTGGGAAGGACAGAGGAACAGCCACTTCCAGACAGCACCTCAGAGCAGCAGAAGGTCGAGGAACCCAATGACACTTCAGGTTTTCTAAGGCTTTCTTTCCACTCACTGGCCTTGGTGAGGGCAGCTTTGGAACGGTCTACAAAGGCCTCATCAATGGTAAACCTGTGGCAGTGCAGAAACTACTCTCAATGGAAGACATCTCACTAGAGGagctgcaaattcagTTCATTCAAGAGGTCCAAATTCTTATGGCATAAGTGTTGAAACATGAAAACCTGGTAGACATAATCACCCTTGTTTTGTGTATGCTTACATGTCTAATGGGTCGTTGCCAGACCGGCTGGCTTGCTTGGACAGTAGTCCTCCTATGTTCTGGTACAGGAGATGTCTGACCGCCTTGGGAACAGCCAGAGGCTTGGATTATCTGCACAGCAGCAACCATGTCCACGAAGATGACAAGAGaaatatttttctGAATAAAGCACTTGTGCCGAAAATCTCTGACTTTGGGCTGACACGGGCCTCGGCCATGCGGTCGTCTTCGACAGTGATGACcgaaaaaaatctaatcaaacagtTTTTGGGTGCTACTGTGTTGCTAGAAATATTGTCTGGAGTCCTGCCAGTTGATGAAAATTGTGATCCTATGTTCCTGATGAACATGAAGGATGACATAGATGAGGAAGAAATGGCCCTGGAGGACAAGAGGATGCTGTCTTAATGACAGAAAGAACAAACAGCCACTGACGAAAGAGGTCCTGACGGAGCTTGAAGATGTTGTCAAAAGCATTTCACTAGAACAGCTGGGGCCTGAGAGGGAAGCAGACAACATGGGAGACGACCCCTTACCTCACACTTTTTCCTTAAACAAGGTTACTTTGCTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25349 lncRNA downstream 10761 22212443 ~ 22215444 (-) True G21827
TU25352 lncRNA downstream 108536 22117161 ~ 22117669 (-) True G21830
TU24709 lncRNA downstream 269724 21956271 ~ 21956481 (-) True G21223
TU24707 lncRNA downstream 270390 21954662 ~ 21955815 (-) True G21221
TU24697 lncRNA downstream 275243 21950710 ~ 21950962 (-) True G21212
TU25424 lncRNA upstream 17235 22248833 ~ 22249067 (-) True G21900
TU25428 lncRNA upstream 21364 22252962 ~ 22253252 (-) True G21904
TU25437 lncRNA upstream 33618 22265216 ~ 22265429 (-) True G21913
TU25441 lncRNA upstream 36164 22267762 ~ 22267965 (-) True G21917
TU25479 lncRNA upstream 85884 22317482 ~ 22317947 (-) True G21954
XM_021589510.2 mRNA downstream 22580 22111004 ~ 22203625 (-) True LOC110508721
LOC110532081 mRNA downstream 492919 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 621776 21587517 ~ 21604429 (-) False LOC110508066
XM_021588588.2 mRNA downstream 621776 21587517 ~ 21604429 (-) True LOC110508066
XM_021587980.2 mRNA downstream 660482 21535882 ~ 21565723 (-) False LOC110507736
XR_002471392.2 mRNA upstream 161380 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 161380 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 203077 22434675 ~ 22437595 (-) True LOC110509244
XM_021590377.2 mRNA upstream 231797 22463395 ~ 22487546 (-) False LOC110509312
XM_021590261.2 mRNA upstream 231797 22463395 ~ 22487547 (-) False LOC110509312
TU24399 other downstream 678432 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 1136955 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 150272 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 608247 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1392428 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1591102 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1991309 24222907 ~ 24226490 (-) True G24542

Expression Profile