RNA id: XR_002471395.2


Basic Information

Item Value
RNA id XR_002471395.2
length 5689
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110508988
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22392978 ~ 22400323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGGCATTTTAAACACAGGGCTCAGCCCAGCTGACTAGGAGACATCAAAGCTGCCCTGCGTCGACTGACTGATCCTAAACATGGCAGTTTCTTATACCCGCTGCACGCTCACTCAAAAATGATAACACTGCTCCCTCCACTTCAGACAGGAACGGAGACAGGCAGACATGTACAGTAGGGGCGATAGAGGGGGTGTTAGCCCCTCCTTACTGCTGTCATTGAAGAAGGAAAAATAGGAAAATAAAAAAGAGCAGGAGGAAGAAAGGAAACCACAGCCATACAGGCAGTGCTACAGGCAGTGCTACGGGCAGTGCTACGGGCAGTGCTACGGGCAGTGCTACGGGCAGTGCTACGGCAGTGCTACGGGCAGTGCTACTCAGCTGAACTGTATCTGCTGCCTGTTTAACAGTGGGGAGAAGACATTATTAGGCGGCGTGCTCctccctctccacagccaggcaGCCTTATCTGTCAGCCATTAGTTAATCAAGGCTGGTAACGTAGAAGTAGAGCAGAAAACCGGCACAGCGCGTGGGGCCAAAGAACAACCTCCGAGAGCTGAGCTGAGCAGTACAGGAGGAGGGCAAGGACCTGGGAACCGACCAACCCCTCCACTCTAAACTCTACTACCAGGCTAGGCTGCTGCCTCACTCTACTCAACACTGGATCAGAGCATGTCTTTGTCTAGGCATGGCAGGCTGCAATTGTATGATGACATCCGCCCATTCCATCACAGAGGACAGGTCCTGTTTTGCAAGGAAGTTTCAAAGACAGAAGTCAAAACAACACATGCTGTCGACGTGGGAAAAGCTGGTAAGAGCAGAACATCGTGGGGCGGAGGAATGTCAGAGTCATAGATCTTTCATACTCAAGGCCAAAATAGCCACACACAGGCCTGATCATCTCCATGCATGGGAAGAAACATTAAGCAACACCTCATACTAGCACTAATACAGTCCAGTCTAACCCTGGCCAACGTGGTCCAAATCTGGCATCCAGACATCAGTGGCCAAAGAGATATCATTAGACAATTACTACACAAGTAAGTAGGCTGTATTAACTGAAATTAATTGGTATTAACTCGCAAATAGGATTTCCTCCCAAAAGAGTTAGCACAAACCAATGTCATAAGTATATTTCGATACCGAAGGtaaaaaaataaggacatttcttaTTGGCGTCACCATGGAGTTTATTGTAAGGGTAATGATGATTGAAAAGGATATTGCAAAGTCTAAATAATTATTGGTCTGTGTTAACAAAGATGACCAAATGTTCACTACAAGAGCTTAAGGCTGCTTGTGATGGAAAATGAAAGCAGTCGACTAAACTCAACTGTGTAGTTGGTGCCAAACTGTGCCTCTGCCATGGCTAGAAACTCAAATAAACAATCCTAAAAGGGCATATTAAGTTTCCCCAACACTATTCTCTTTTTAAGTCAACACCACTCAgaaaagatgaactgagcaaccATAAGTCAACTTTCGGGAATGACAAAAACAACCCGTTTTTCTACCTGTCCAAACATTCAGCTGGAACCAAGATCCATTTCCATGTCCCACTCCAGAAAAACTCCATTGGTGCTTCATTGAGTACAATGCTGTTGTCTCATAAAGCTATGCCAGACCAGGAAAGTGAACCTGATTTCGGACAGCAGAACTAAAAAGACGGAACAATGCATGAGATTCTAAAGTGACCTTTGGCCCAGGATTTCCAAGAGCTTCCAAGAGTCCCTATTCCATCTTCTTCTTACTCAACACCACTTCACTGTTAAGCTGTCAAGACCCAAACTCTAGTGTCATTTATCCTAGTGACGAGTTCACAACCAAAGCCAAAGACATAGTGttcttttaaaataaataaataaaatcaaatgttatttgccacatgcttcgtaaacaacaagtgtagactaacagtgaaatgcttccctACGGGCCCTTCCCATCAACGCAGAGAAAAATGATAGAAAAAAAtgataacacaaggaataaatacacaacgagtaacgataacttggctatatatatGGGGTACAGCTAATGGTTGTCTTACAGCATTGTTCATCTTGGGTTCCCATAACAGAATTGCATCGTAAGACACCAACGACCTTGACCTTGGCCTTGTGTTCCAACCAAAAAGCTACAGTACAGATATCGGACAAAGGGCAACATTTTCCTCTCTCTAAGAGACACAAGAAAATGTTGCCCAAAATATTGTATGATGGGACGATCACATTGTTGTTAGGTTGTTTGTAATTTAGAGGTGGTTGATGGTCAACACCTGCCCGTGTGTGTCTCATTAACACATTCCTCCAAGCTGAACCCTCTGTTTACACCTCTGTCTTTTTATGGGGCCGTTATGGGGGTGAAATTGTtgtgtgttgctggtgtgttTCACAAGCCTGATATGCTATCTACCTTTGATTTCACCCCCACTATAGCACTCTTTGAAGATGTGCAACAATGTACAATCTGCAGCTGGGCTCAGTGGACTCCAAAAATTGTGTTAAACCTTGAGAATAACTGTGTCCTTAACAGTAGAAGGAAAACAAGTTAGGTAATAGCATTGACTACAAAGTCAAAGGCAGCTATAATTCCTTGGTTTCTAGCACATCAGATATAATATTTGCCCACCAATGACTGCCTCACGTAGCCACACTGTACATTTTCAGATCCTAGACGGGTGTCAAACATACAGCCCGTGGGCCGGTTCCCTGGGTGGTTTGAGTATATACTATATTTTTTAATAGGATTATATCATTATTCTGTCATTattctgagtggcgcagcggtttaaggccctgcattgcagtgctagaggcgtcactacagacccaggttcgatccgTGATTCGGAGTCCCTTAGGGcgttgcacaattggcccagtgtcactgtcacgagtccgaccgagggtggttTCCCTTCCCgggcgggtggcgctcggcggtagtcgtcaccggcctattagctgccactgattgtctttcctccccctccttgtatgtttattcGTAGCACCTGTTTATGtataattagtttgtctttattagacagctggcccgcctggttgttgtgcgggattattcattgtaaccttcggctctgttgtAGAGGTACGTGTTAGTGCCTGGTCGTGCATTTTCAGTTGTACATTTTCATTCCCTGTGTTTGGGGCCGTTActattgtgagcaccctgtggtgctaTTAAAGAAGCACATCAttgcactctctgtctcctgcgtttgactccacacccacgacacccggagcattacagtcGTCCGGGTttcgggagggtttggccggggtaagccgtcattgtaaataaaaatgtgttcttaactgacttgcctggttaaatatatatatatagttttttaaatttgatactttaaaatgactaaaagcAAATCcaaactgtgtagaaatgatagagtttcttgactgtgtccaACTCGCTAATAATCACCCAAATGAAAACAAGACAGTGAGGGAGCATAGAAAATTCAAAAATCAATGGATAGATtccaatttaaaaaatgtgattGCGAGGAAATATAACCAATATCCATTGCGGCCCTCCAGACCTCATTGACAAAATGAGTTTGTGCTTGGAATTTACTCTGGCGGATGATATAAGAGGactgaacattgtgtgatgtaAACGGCGGTGTCGTTTAATCACAAAGGGATGGGCGGGAGACGTTGGGGCTGAATATGTAACATCGATGAGTACTGTAGGCTCAGACATTGACTTGCTGGAATGTCTTCACCATCTGTGAACCAGCGGCCCTAAAGCTCTGAGAGACAGATGCACAAGTAGAAACAGACCTGCCAGCCAGGTAGCTAATGTGGAACGTGCAGTACAGGACCCACATCAGTAAAGGTAGAGCCTGGAAGTCTTCATATAAAGAGTAATACACTGACTGACGTCTCTTGCACTGCTAACTGACGCCACACAAGAAAGCAGCGGTGTTGGGTGTCTTGGTAAGATGTGAGGTAAAAAGTAATAAGCTCTACTTTCTAGGGAGATATCGTATTTTGAGTGGGTTACCACATTCTTCTAGGGCAACCTCAAACACTTTCCCACTGAACCAagtttggagagaaaaaaaatgtagacaaaTATGAAGAGTTTGTACAGTCCAACTACCAAGGTACATCAACATGACAGCCACCGACAGGCCCCAACATGAATAATCTCCAGTAGAGACGAGGTGAGAGAAACATGCATTGAAGTCCCATTTCAGAGAGGATTCACCCCATAAGCTTTAGAGATCTTTCTCTCAGATGCGTTGCAATGCCAGTTGAGGACCTGTTCCCGATCATTGGACAAGCCAGGGAAAGCCTAGTTTAAACGCTTCCAGATCTCTACTTATTTTATCCCCCTGCATCCATCCCCAGCTGTAGCGCCAGCGAAACAAAAATCTGCCTAAACTAGTCTCTCAATCttttccccactctctctccacttgCTCTGCTCTGTATCCAGTTTCTTTGTGGTCGCGAGTCAACTCCTGCTATTTTATGTCATCACCCTCCGTCACTGAGACTGCATTAGTGGCTATGTCTAAACGAGCCTTTAATGTACAGGACTAGGCCACATAGAGCCAAATATATATCAAACTTTGAAGTTTGACATCAACCGTGCTTGATCGCAGATGTCTATATAGGCAGGAGGGTTCACTGGTTTAGATGAAAGACTCTCCATCGCTGACACCTAATATTTATGTTCCATATGTACTATATAAATATCTTGTATAGTTCTCTCTCAGCCAAACgttaagaaatgtgtgtgttttgttgggcAATCTGGGATAAAAACAAAACAATCTTTGTATACAAGCCGTGTCTTTTCTCTGTCATTTGTTTCTATTGAGGCATGGCAGCATTATTTCATTGCTCTCTAAATTGCAAGAAATAAATATTGGACACATCAATGTTGATGGAGAGCATACTAATATTACAGTTGTTTTTTATTCAAATCCTGGGACAAAACCCTCCGAACATGCCAAATCCTACAAGTATACTGACCAATACAACTCATCAATTACCATAATTTGGTTTGGCTTAATGAATAAACCACCACTAACAGGGACCAAATGTAACATTAGCATCCTGCTCTGGTTTCCAACCTATGACATGAACCATGCTTGAAGAACTGAGACTGAGGGAACCTCCAAGTCTCCAAGTCCTAGCTAGTCCAGTTGATCAGTGCTACACCGGCATATGGGCTGGATCAGAAAACACAAGCTCAATGATGTTACTACCATCTGACCCCAGGGTGACAGGTTTAGGGGATTTGCCTCAGGCCAAAGTCAAATATGTTTATGTTGTTGTCATTTTAAACAAATATGTTTATGTTGTTGTCATTTTAACAAATGTCTTTCGTTCAGGGTCACGTCAACAAAGATCGCTCTCATTGGGACTCCTCCACTAACTGCAGGAAATTGTGTTTATAAGCAACAAATAGgcataaattactaaaatgttggAGTGTTCAATTCATCACATTATTGTTGGTTAGTGCTGCTTCACCCCAAAAAGGGTTGCAGCTGTTTATAAAGCAATCATCATTACTTAATGATGTTACCATTGTTGCTATATCTATTTTGTGTGGAACTTTACTGCTCCCAAACTGTGTTTGAATAACAAAATCTGTGCAATAAATTTCAATTATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25523 lncRNA downstream 6045 22386681 ~ 22386933 (-) True G21996
TU25521 lncRNA downstream 8300 22384346 ~ 22384678 (-) True G21994
TU25518 lncRNA downstream 16966 22375781 ~ 22376012 (-) True G21991
TU25513 lncRNA downstream 25766 22366823 ~ 22367212 (-) True G21988
TU25507 lncRNA downstream 32070 22360643 ~ 22360908 (-) True G21982
TU25639 lncRNA upstream 167719 22568042 ~ 22569972 (-) True G22092
TU25595 lncRNA upstream 175280 22575603 ~ 22575951 (-) True G22052
TU25596 lncRNA upstream 176499 22576822 ~ 22579656 (-) True G22053
TU25646 lncRNA upstream 194460 22594783 ~ 22595027 (-) True G22099
TU25661 lncRNA upstream 217212 22617535 ~ 22617843 (-) True G22114
LOC118966627 mRNA downstream 161380 22226205 ~ 22231598 (-) True LOC118966627
XM_021589510.2 mRNA downstream 189353 22111004 ~ 22203625 (-) True LOC110508721
LOC110532081 mRNA downstream 659692 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 788549 21587517 ~ 21604429 (-) False LOC110508066
XM_021590202.2 mRNA upstream 34352 22434675 ~ 22437595 (-) True LOC110509244
XM_021590377.2 mRNA upstream 63072 22463395 ~ 22487546 (-) False LOC110509312
XM_021590261.2 mRNA upstream 63072 22463395 ~ 22487547 (-) False LOC110509312
XM_021590310.2 mRNA upstream 63072 22463395 ~ 22487548 (-) False LOC110509312
XM_021590452.2 mRNA upstream 63072 22463395 ~ 22487548 (-) False LOC110509312
TU25520 other downstream 10770 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 845205 21535933 ~ 21547773 (-) True LOC110507736
TU23817 other downstream 1303728 21085468 ~ 21089250 (-) False LOC118945319
TU25921 other upstream 439522 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1223703 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1422377 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1822584 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 2152268 24552591 ~ 24553562 (-) True LOC110514811

Expression Profile