RNA id: XM_021590202.2



Basic Information


Item Value
RNA id XM_021590202.2
length 662
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC110509244
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22434675 ~ 22437595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCACGACAGGGACATTGAAGATCTCTTTGCTGTAATATTGCATTGTATTTTTGCTTATTCTATAAGCATACCTATTTTGAAGAAAGCCTTACATTTTTAAATTATCTTTTATCTCTTGTACTGTTGAACAAAACTTTAAAGATGAAGAAGTCTTTTGGAGTAGTGTGCATATCACTCATTTTATTTGCAGCTCTGTCAGAAACAATTGGATTAGTGATTGCGGGTAAAGAGAAGCGAGGGTGGACACTAAACAGTGCTGGCTACCTTTTGGGTCCCCACGGCATTGACGGTCACCGCACTCTCAGTGACAAGCATGGCCTTGCTGGAAAGAGAGGCATGCCCCTGGACGATGACTTCAAAACAGGTGCCTTGAGAATAGCAGATGAGGATGTAATACACACTGTCATTGACTTCTTATCATACCTGAAACTTAAAGAAATCGGAGCTCTGGATACCATgccttcctctctcacatcagaAGAGATGGATCAGCCCTAGTTCAACTGATCTCTTCTCTACGCCTTACCTGCCTACAAACAACAGTATCTGTACATTTCCCATTATACTGGTGTCATCATAACAACAATATACTAAACAGATTAATCACGTTCTTATTATAATTTGAAAGAAATGGACTGAATAAAACTTTTGAATGGCAAAA

Function


GO: NA

KEGG:

id description
K05244 GAL; galanin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25527 lncRNA downstream 34580 22395982 ~ 22400095 (-) True LOC110508988
TU25526 lncRNA downstream 40019 22393193 ~ 22394656 (-) False LOC110508988
TU25523 lncRNA downstream 47742 22386681 ~ 22386933 (-) True G21996
TU25521 lncRNA downstream 49997 22384346 ~ 22384678 (-) True G21994
TU25518 lncRNA downstream 58663 22375781 ~ 22376012 (-) True G21991
TU25639 lncRNA upstream 130447 22568042 ~ 22569972 (-) True G22092
TU25595 lncRNA upstream 138008 22575603 ~ 22575951 (-) True G22052
TU25596 lncRNA upstream 139227 22576822 ~ 22579656 (-) True G22053
TU25646 lncRNA upstream 157188 22594783 ~ 22595027 (-) True G22099
TU25661 lncRNA upstream 179940 22617535 ~ 22617843 (-) True G22114
XR_002471395.2 mRNA downstream 34352 22392978 ~ 22400323 (-) False LOC110508988
XR_002471392.2 mRNA downstream 34364 22392978 ~ 22400311 (-) False LOC110508988
LOC118966627 mRNA downstream 203077 22226205 ~ 22231598 (-) True LOC118966627
XM_021589510.2 mRNA downstream 231050 22111004 ~ 22203625 (-) True LOC110508721
LOC110532081 mRNA downstream 701389 21686077 ~ 21733286 (-) True LOC110532081
XM_021590377.2 mRNA upstream 25800 22463395 ~ 22487546 (-) False LOC110509312
XM_021590261.2 mRNA upstream 25800 22463395 ~ 22487547 (-) False LOC110509312
XM_021590310.2 mRNA upstream 25800 22463395 ~ 22487548 (-) False LOC110509312
XM_021590452.2 mRNA upstream 25800 22463395 ~ 22487548 (-) False LOC110509312
XM_036970700.1 mRNA upstream 25800 22463395 ~ 22487550 (-) True LOC110509312
TU25520 other downstream 52467 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 886902 21535933 ~ 21547773 (-) True LOC110507736
TU23817 other downstream 1345425 21085468 ~ 21089250 (-) False LOC118945319
TU25921 other upstream 402250 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1186431 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1385105 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1785312 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 2114996 24552591 ~ 24553562 (-) True LOC110514811

Expression Profile