RNA id: XM_021590261.2


Basic Information

Item Value
RNA id XM_021590261.2
length 4334
RNA type mRNA
GC content 0.46
exon number 26
gene id LOC110509312
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22463395 ~ 22487550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCAGTATGTTTGATTGACAGGTAGATACTTCAGTTGTGGTGGGGGAAGGGGTCGTTGAAGTTGATGGAACCGCCATCTTGAAAAGTGCTCTCTGATGGTCTACCTTTTCGCGCCTGTCAGAATCACTTGTAAACATTAATTTTTTTTCTTAGGATTTGAATGTTCCTCGCTTTTAACACTTTAGGCTAATGGATCAATAAGCTACATGCCGGGGACTCGCCATATACCGCTGTTTATCGGTGTGCGTTGATCTGTTGAGGCCGAGGTGGTCATTCTGCTGTATGTGTCCTGTGTCCAAAGGTCTCTCGTCACTGCTGTCTGTGAAGCCTGTAATGGGCCAGAACTCCCAAAGAGCACaagcattattttatttttaacctCTGGACGGACTCTACCCCAGTCAGAAGCATCATGTTTTGGAAGTTTGATCTACACACAACGTCTCACATTGACACCCTCCTGGAGAAGGAGGATGTGACTCTGACTGAGGTGATGGACGAGGAGGATGTTCTGCAGGAGTGCAAGGCCCAGAACCACAAACTGGTGGACTTCCTGGTGCGGCCTCAGTGCATGGTGGACCTGGTCACCTACATCACACAGGAGCCAAGTGATGATGTAGAGGAGAAGATCAAGTACAAGTACCCCAACATATCGTGTGAACTCCTTACCTCGGACGTTGGACAGATCAATGACAGACTGGGAGAAGATGAAAGTTTGCTGATGAAACTTTATGGATTTTTGCAAAGGGACTCTCCACTCAACCCTTTACTGGCCAGCTTCTTCAGCAAGGTCCTTAGCATCCTCATCGGCAGGAAACCAGAACAGATTGTGGAGTTTCTGCGGAAGAGGGAAGACTTTGTGGACTTAATGATTAAACACATAGGGACCTCCGCCATCATGGACTTGCTGCTCAGAATGCTGACCTGCATTGAACCACAGCAGCTCAGACAAGATGTCTTAAATTGGCTGAATGAGGAGAAGGTGATCCAGAGGCTTGTTGATATGGTCCAACCTTCTCAGGATGAGGATAGGCACTCCAACGCATCCCAGTCTCTGTGTGAAATAATCCGCCTCAGCAGAGATCAGATGTTCCAAGTGCAGGGCTGCTCTGAGCCTGATCCCTTACTGGCCACACTGGAAAAACAAGAGACTGTGGAGCAGTTGCTATCCAACATCTTTGACAAAGAGAAAAATGACTCTGCCATAGTCAGTGTAATTCAGATTCTCCTGACACTCTTTGAGACACGAAGACCAGCGTTCGAAGGCCATTTGGAGATCTGTCCCCCTGGTATGAGCCACCCATCCTTCTCAGTCAATCAGAGCATTCTGGAGGCTGTCAGGCCCAGGCTCAAAGACTTCCATCAACTGCTGCTGGAACCCCCAAAGAAGAATATCATGAAAACCACATGGGGCATGCTGGACCCCCCAGTGGGCAACACCCGGTTGAGTGTGGTCCGTCTTGTGGCCAGCCTCCTGCAGACCAACACTCATATTATCAACATGGAGCTGATCAACCTCAACACTCTTGGAGTCATACTTGACATGTACTTCAACTATATATGGAATAACTTCCTACATATACAAGTTGAAATCTGCACTGCGATGATCCTAGCAATGCCCCCAGCCCAAAGTGAAAACCCCGAAATCAACAGAGATCAGGACCAAGAGCCTGTCAGAGAAAGCCACCTCATCAAACACCTGTTTCAGAAGTGCCAGTTTATCCAGAGAATTCTTGATGCATGGAGCTCCAATGAGAAGGAGCAGGGTGAGGGTGGACGTAGACGGGGCTACATGGGGCACTTGACCAGAATAGCCAACTCAATAGTGCACAACAGTGACAAGGGCCCCAATGGTGCGAAGATACAGCAGCTCATCTCAGAGCTCACAGAGGATGACAAAGAGAGATGGGAGGCCTTCACTTCTGGTCAGCTAGCTGACACAAACAAGAGAAACACTGTAGACCTAGTGAACACACACCATATTCACTCATCCAGTGATGATGAGGTAGACTTCAAGGACAGCGGATTCCACCAGGATTCCTCTCTACAACAGGCCTTTTCTGATTATCAGATGCAACAAATGACGTCCAATTTTATTGAGCAGTTTGGCTTCAATGACGAAGAGTTTGCCGATCAGGATGATGTCGTGGATATTCCCTTTGATAGAATATCAGACATCAATTTTTCCTTGAATACAAATGAAAGTGCAAATATAGCTCTGTTTGAGGCCTGCTGTAAGGAGAAGATCCAGCAGTTTGAAGATGCAGGCTCTGATGAGGAGGACATCTGGGATGAGAAAGATATCACTTTCGCACCTGAAGCTCAGAGATGTCCTCGGAGCTCTGGCAGTACAGATAGTGAGGAGAGCACAGactctgaggaggaggatgtgAAACGTGATCCCTTTGAGCCTAACAACGCCAGCTCTGATGACAGAATGGAGGTGGACACGGGTGAGGGGCCTGTGTGGACAGCTAACTTTGACGACATACCCATGGACACTGGGAGTTCTACGTCGATCAGAGCACCTGGCCCAGCCACCACTACTGCCACAGCATCCCCTTCCTCCCCTGCAGTCCTACCAGAATCTGCGGGATGGAGCTCCCCCAATGCTTCCCCTGACACAGCCACGGGCTGGGCAGACTTCTCTAGCAACTTCTCACCAGTCAACCCCAAAGATCCTTTGAGGAACAATTCCCCAGTAGCGATGGAGACCTGCATAGGGACAGGAGACCCCTTGGGTGTCAACGCACCACTGCAGCCTGAAGTTTCTGACCAGTGGCCAGGGGACGAGGcagcccagccagccagctcCCCTGGAAGGAAAGCCGGAGGCTCGGACGCGGAGGAGACTATCACCACTGAGACGGTCACCAATGGATCCATGAAGGAGACAGTTAGCCTTACTGTAGATGCCAAAACTGAAACGGCTGTTTTCAAGAGAGTGTTGAAATCTTATCGTGAGGATGAGAAGTCTACCTCAGAGGACACATCTGCGAAGTACACTGTGGGGGAGAGTAGAACACCAGAGAAGGGTGTGTCTGCATCAGTCCAGCCTGCCAGCAACTGTTTGAAACCAAGCAGTGCAAAACATTCAGATACAGAAAAATCTAAAGTCTCCAGTGATGCTGTTAATGGTCCTCTAGAAGAAGGAACAGCAATGGACAAAGCCAAAACACAGCAGAGTGTGACCTCACCAGAGGCAGCTGTGAACGGCCCGGTGTGATATGTGGTTCCTGCCAGCCTGTTCCTGCAACTCACAGCTCTCTGCCTGGATCACCAGTAGAGGGCAGTGCAAGCCCAGTCAGAGCTGCTGCTGCACTAACTTCAACAGATCAGGACCAGCAATATTCATAATAGGCTATTACAGACAGTTGTACAGAAAGTTGGAACTGAATGAAGAGCGAAATGTAATggatacagatttttttttttgcattcgtTTATATACTATTGTTCTTATGAGGTTCTGTCCATCTTGCCACTCAGTTAAATAGTCATGTTGATATAGTTAAAATGATTGTATGaataaaatattttataaaaaaatgtatacagtaaCAGAAGATTAATAACTGAAATATACCAATTGGAACACTTAGTGTGACCAAAAGCTGTTTTTGATAGGGTTTCCTCCTGCACAAAATCAAAAAATTAAATTTCCTACTAAATACAATAGCTGCCATGAAATGTTAATTGGAAACCAATGTTGGTCTATTTGTCAGTACGCGTGTTAGTAGGGATTCAGAATGATTTTTAAATATTCAAAGTTTATTTTGCCACAGGtattattttgtaaatgtttctTGTATCCTTTCAACATGAGCAAGATTTGAAAACCTTTGGTATAGTTTTTAACTTAATTTATTATTAAGGTAGATGATACTAAGAGCCATACACATGGGGGTGTATGTATTCCgcagattctgttgcaaaacattttttttttaattaagcaTTTCTTAACGgaacggggagggacctacctgaatttgtccaatagaaactcattTTAATCTGTTTTGGTTCTTAACTAAACAGAttgcgtaatgaatacacccatgtTCTCTCCCCCTTGACAACATTAAACTGTACAAACCCCAAGATGAATAACTGTAGAAGATGGTTTCCAGTTGCATGTAGCTAGTGAGTGTTAACACTGTCTGAAGGCTCGTGGTAAATGGGTCCCATTTTAAAACTTTTCCCGTATCACTCAAGTCAACCTTTCTACCTGCAAAATGATGGGGATGtaatgcatattcttggtattgCTTCAATCATGCATCAACCATTGAttcttttttttaataaaaaggtATCTGTGCCAGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25527 lncRNA downstream 63300 22395982 ~ 22400095 (-) True LOC110508988
TU25526 lncRNA downstream 68739 22393193 ~ 22394656 (-) False LOC110508988
TU25523 lncRNA downstream 76462 22386681 ~ 22386933 (-) True G21996
TU25521 lncRNA downstream 78717 22384346 ~ 22384678 (-) True G21994
TU25518 lncRNA downstream 87383 22375781 ~ 22376012 (-) True G21991
TU25639 lncRNA upstream 80495 22568042 ~ 22569972 (-) True G22092
TU25595 lncRNA upstream 88056 22575603 ~ 22575951 (-) True G22052
TU25596 lncRNA upstream 89275 22576822 ~ 22579656 (-) True G22053
TU25646 lncRNA upstream 107236 22594783 ~ 22595027 (-) True G22099
TU25661 lncRNA upstream 129988 22617535 ~ 22617843 (-) True G22114
XM_021590202.2 mRNA downstream 25800 22434675 ~ 22437595 (-) True LOC110509244
XR_002471395.2 mRNA downstream 63072 22392978 ~ 22400323 (-) False LOC110508988
XR_002471392.2 mRNA downstream 63084 22392978 ~ 22400311 (-) False LOC110508988
LOC118966627 mRNA downstream 231797 22226205 ~ 22231598 (-) True LOC118966627
XM_021589510.2 mRNA downstream 259770 22111004 ~ 22203625 (-) True LOC110508721
XM_036970958.1 mRNA upstream 5013 22492560 ~ 22555853 (-) False LOC110509621
XM_036970897.1 mRNA upstream 5013 22492560 ~ 22574410 (-) False LOC110509621
XM_036970849.1 mRNA upstream 5013 22492560 ~ 22574935 (-) False LOC110509621
XM_036970786.1 mRNA upstream 5013 22492560 ~ 22574938 (-) True LOC110509621
XM_021591102.2 mRNA upstream 92765 22580312 ~ 22590797 (-) False LOC110509695
TU25520 other downstream 81187 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 915622 21535933 ~ 21547773 (-) True LOC110507736
TU23817 other downstream 1374145 21085468 ~ 21089250 (-) False LOC118945319
TU25921 other upstream 352298 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1136479 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1335153 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1735360 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 2065044 24552591 ~ 24553562 (-) True LOC110514811

Expression Profile