RNA id: XR_002471547.2


Basic Information

Item Value
RNA id XR_002471547.2
length 2830
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110510264
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22915370 ~ 22956393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTTGAGGCAagagggattgggttaaatgCATTAGACACATTCattgtgcaactgactagatatccacTTTCCCTTACAAATTATCTATGTACTGTAATTCATTAATTGTCAGTGGGCATGCTATTGTTTTGCTGTTACCACCAAGAGGAAGAGGGCGGACCCCATTCTGTCGTTTAATCCGATTGGTCTATTAGTTGTCAAAATCGCACCCAAAGATCTACTTTTATTGGTTGTTGTGCTGAATTGCATTAAATAGGTTGCCGGAATTGGGTAAAGAAACATACCACTGGATATGCATTGTTTCTTGATTTCCCACCTCAGACCGAACCCAGTTGCAGACAAAGTGGCGTGAAAGGACCTCAACTACTTAGAGTAAAAAAATGGTTTAATCAATCAACCAGAAACTATACACTTCTTGGATTCCCGTTTAACAACCACATGTATTTGGAGAAATTAGGACAAACGACTCCCTGGAGGTCTCTGAAACCATGTCAGTCAGCGTCCATGAAAACCGTAAGTCCCGGACCAGCACGGGCTCCATGAACATCTCACTGTTCCATAAGCCCTCGCATCCAGACAGCGTGCTCACTCACCTCAACACCCTCCGCAAGCAGTGCATGTTCACTGACGTGACGCTGTGGGCGGGGGACCGCTCCTTCCCGTGCCATCGGGCGGTACTGGCTGCATGCAGCCGCTACTTTGAGGCTATGTTCAGCGGCGGGCTCCGTGAGAGCCTGGACAACGAGGTGAACTTCAGAGACAGCGTGCATCCAGAGGTGTTGGAGCTGCTGCTGGACTTTGCCTACTCGTCACGTGTCATCATCAACGAGGAGAACGCAGAGTCGTTGCTGGAGGCGGGAGACATGCTGCAGTTCCACGACATCAGAGACGCTGCTGCGGAATTCCTGGAGAAGAACCTGCACTTGTCCAACTGCCTGGGTATGATGCTACTGTCTGATGCCCACCAATGCAAACAGCTGTATGAGCTCTCCTGGAGGATGTGCCTGGTGCACTTTGAGGCGTTGCGGGACACAGAGGACTTCTACGGCCTCAACAAAGACAAGCTGCTGAACCTGATCCTCAGCGACGAGCTGGAGATCGAAGACGAGCATATCGTGTTCAATGCTGTGATGCGCTGGGTGCGCTACGACCTGGACGGCCGCAGAGACGACCTCCCTGAGCTGCTGGGTGGAATCCGCCTGGCCCTGCTGCCCTCTGAGTGTCTGATTGAGGCGGTGGCCTGCGAGGAGCTGGTGATGTCAGACAAGAGGAGCCGGCAGATAGTGGAGGAGGCCATGCAGTGCAAGAAGAAGATCCTGCAAAACGATGGGGTGGTCACCAGCCCATGTGCCCGGCCCCGCAAGGCAGGCCACACGTTGCTCATCTTGGGAGGACAGACCTTCATGTGTGATAAGATCTACCAGGTGGACCACAAAGCCAAGGAGATCATTCCCAAGTCGGTCTTGCCCAGTCCCAGGAAAGAGTTCAGCGCCTGTGCAATTGGCTGTAAGGTCTACGTGACTGGGGGGAGGGGTTCTGAGAACGGGGTATCCAAGGATGTTTGGATCTATGACACGGTCCACGAGGAGTGGTCTAAAGGAGCTCCCATGTTGATAGCACGGTTTGGCCATGGTTCAGCTGAACTGGAGAACTGGCTGTATGTGGTGGGTGGCCACACTGCCATAGCAGGCATCTTCCCAGCCTCCCCCTCAGTCTCCCTCAAACAGGTAGAGCGGTATGACCCACTCACCAACAAATGGACCATGATGGCGCCGCTCAGAGATGGTGTTAGCAATGCAGCTGTGGTCAGCGCCAAGCTAAAGCTGTTTGTGTTTGGTGGTACCACCATACACAGAGACAAGGCCTCAAAGGTGCAGTGCTACGACCCTCTAGAGAACCGCTGGGCCATCGCAGCAGAATGTCCGCAACCGTGGAGATACACAGCCGCTGCTGTTCTGGGCAGCCAGATCTTCATAATGGGCGGAGACACTGAGTTCACCGCCGCCTCCGCCTACCGCTTTGACTGTGAGACCAACCAGTGGTCTCGTGTTGGGGACATGACTTCTAAAAGAATGAGCTGCCATGCGGTGGCCTCTGGGAACAAACTGTATGTGGTGGGGGGCTACTTTGGGACGCAGCGCTGCAAGACTCTAGACTGTTATGATCCCACGTCTGATAGCTGGAACAGTATAACCACAGTGCCTTACTCACTAATTCCCACTGCGTTTGTAAGCACCTGGAAACATCTACCTGCCTAGCAACCTTGACATGAACAAGGAGTGGTCTCCAGAACTGGGGACTAAAGAGGGCACCTGATTGGCATTTCACGCAATTGACTTAGCAGGAGGAAACAGTTATGCTTGACTCGTTTGGAGGTTGAAGGATATCCCACCCTGACACCTTGGCAGATGTAAAGAACTTGAGAACCCCCCAGCCACCAGGACAATCACCATATCCCAGGATTTGTTTCAGGGGTGTGCAACATCACAATGTTAGATACTTACTGTACTGCTGGagctagaagcataagcatttcgctgcaccagctataacatctgctaatctgtgacgtgaccaataaacttttatttgattGTCATGCAGATGGTTCAGGTCATTGTAATTTATGACGCTCATTCTAAAATACAGATGTGACTTTTGGGGGATTGCACTGTGTGCAAGTCTTACATTTAGACCACAATTAGTTGATTGAGGTGTTGGTAaagggctggaacaaaaacctgTAAACTCCTAtgtataaaaacattttaaaaacctgtggaattttctaagctatttaaaggcacagtcaacttagtgcatgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25728 lncRNA downstream 208829 22712533 ~ 22712738 (-) True G22181
TU25686 lncRNA downstream 272551 22648781 ~ 22649016 (-) True LOC110532107
TU25680 lncRNA downstream 275889 22645454 ~ 22645678 (-) True G22133
TU25674 lncRNA downstream 285004 22636327 ~ 22636563 (-) True G22127
TU25663 lncRNA downstream 300242 22621125 ~ 22621325 (-) True G22116
TU26184 lncRNA upstream 90168 23046559 ~ 23046779 (-) True G22590
TU26187 lncRNA upstream 92112 23048503 ~ 23048740 (-) True G22593
TU26290 lncRNA upstream 174150 23130541 ~ 23130774 (-) True G22693
TU26499 lncRNA upstream 324912 23281303 ~ 23281631 (-) True G22901
TU26506 lncRNA upstream 329278 23285669 ~ 23286052 (-) True G22908
XM_021591382.2 mRNA downstream 225053 22655517 ~ 22696514 (-) False LOC110510003
XM_036971630.1 mRNA downstream 225053 22655517 ~ 22696514 (-) True LOC110510003
XM_021591303.2 mRNA downstream 230878 22655517 ~ 22690689 (-) False LOC110510003
XM_021591461.2 mRNA downstream 230883 22655517 ~ 22690684 (-) False LOC110510003
XM_021615727.2 mRNA downstream 271974 22640169 ~ 22649593 (-) False LOC110532107
XM_021591923.2 mRNA upstream 364680 23321071 ~ 23619775 (-) False LOC110510575
XM_021591958.2 mRNA upstream 364680 23321071 ~ 23619775 (-) False LOC110510575
XM_021591998.2 mRNA upstream 364680 23321071 ~ 23619775 (-) False LOC110510575
XM_021592045.2 mRNA upstream 364680 23321071 ~ 23619775 (-) False LOC110510575
XM_021592107.2 mRNA upstream 812902 23769293 ~ 23774865 (-) True LOC110510928
TU25921 other downstream 78262 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 539359 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 1373794 21535933 ~ 21547773 (-) True LOC110507736
TU23832 other downstream 1832317 21085468 ~ 21089250 (-) False LOC118945319
TU26999 other upstream 667635 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 866309 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1266516 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 1596200 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 1907696 24864087 ~ 24864834 (-) True znf276

Expression Profile