RNA id: XM_021592045.2


Basic Information

Item Value
RNA id XM_021592045.2
length 6925
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110510575
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23321071 ~ 23619775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtgtgtttagATTACTGAGGGGAAaatatttaaaccattttagaataaggctgtaaagtaacaaaatgtggaaaagtcaaagggtctgaaagctttcaaaatgcactgtatatgcagtCGTAAATGAGATATTCATGAATGAGAAATATTTTTGTGAATATTTAACTCAAGTTAATCTTCATCATACTGGCTGCCTTTTAGCTGTTTTGTTGCCATTCTTGATTGTCTAGGCGTAGCCCTCTAAAAATGATACATTGTGGCCTGGACGCCCGATGTGCAAATGAACATCCAACCATAGGCCTAATGATAAATCACCATAAATGTGTAGCCTATTGTTATTGTGCTATAGTATAGCCCACGCTCTGTGTGCAATTGCTGTTATGATCTGATTTGAGCTGCATCCTGAGTTGCAGGTGTGTCAGTTTCCATTCTGCCCTGTAGGTGGGACTTAATGCTTTGAGCATGgacctcgctttctctctcgtcACTTTCTTCAACGCGCTATCCCTCGGAGTCTTGGAGCGGTGCTAGTACAACCTGGAACTAAGCGGCTAACGGCAGCATGAATACAGGGTAACATATACTATGCATTCTAGAGAGGAGGACAAGCTTGGAGTACTGCTTTTTGAACCATTCCCACTTTGACGgagtatttttttccccctttttcctcatcTGTGAAATAGATGGACATTAGCTAATTCGCATCAATTTGACATACCTCCATACATTCACTCGCCCGCGCGCACACACCACATAATTGCATATTCAGACGGTCTCCGATTTGGAGGTTCAAAAACATCAAGGATATTGTCCTAATAAACGTTGAGTCATGGATTCATTTTTTATTCCACCACGAATTTGCTGGTGGAGGGTATTGTTTCTTTTGACCATCTTTCAGGACTACTTGAGCAATATGCTGGACTGCCCGCCAACCTGCAGCTGTTCTCCAACTGAGATCTATTGCAATAAGTCTGACAATGGGAAATTCTTTCCCCTGCTTGCACTGCAAGATACTGGGAACAATGGAAATAACAGTATCGAAGATGTGTTCAAGAACATCACCTCAATACACATTGAGAACTGGACTGGCCTGCAGACGCTGAaagatgtggacatggagctgtACACTGGACTTCAGAGACTAACAATCATGAACGGCAACCTGCGAGGTATCCAGGCCAGAGCCTTCTCCCAGAACCCCCACCTGCGCTACATAAACTTATCGAAGAACCCTCTGACCACATTATCATGGCAACTCTTCCAGAATCTGCAACTCTTCGAGCTgAGGCTGGAAGAAGTGGTGTTTGAGTGTGGCTGTGATATCCGCTGGATCCAGCTGTGGCAGCAGCGAGGGGAGGCTGGCCTGAACACCCAGCAACTCTTCTGCAACAACGGAGCCTCCAAGATCCCTCTGCAGGCTATGAATATCTCACTCTGTGacctGCCGGACATCAGTGTGACGCACTTTAACCTCACGGTTGTTGAGGGGGACAGAGTCACCATCACCTGTAATGGATCTGGATCCCCCCTACCTGAGGTGGACTGGACCGTCATTGACCTCCACTCCATCAACACTCACCAGTCCACTGTGTACTGGCCCAATGTCCACTCCATCAATCTGACCCTGTTCAACGTGAGTCGTGATGACAACTTCTACATGCTGACCTGTATAGCAGAGAACAAAGTGGGGATGGCGAACACCTCAATTCAGCTCACTGTCCATTTCCCCCCCACCATCCTGAAGCTGGATGAGCCCGAGCGTCGCCATGAAACCTGCATAGAGTTCACGGTGCGTGGCAACCCCCTGCCCACCCTGCGCTGGTTCCACCGGGACAACGAGATCTCCCCCAGTGACTACATCCGCACTGAGATGGATACCTACCAGGACTACCTAGAGGGATGCCTCAACTTCAAGGACCCCACGCACCACAACAATGGCAACTACACTCTGGAGGCTAGCAACTTCCTAGGAGTCACCACCAAGACAGTGTATGGACACTTCCTCAACGCCCCGTTTCCAGACGATTATGGTGACTATGGGACTCCTACGCCAACCATCACAGTAACACACAGGCCTGAGGAGGACAAGTTCGGGGTGTCTATTGCTGTCGGCCTGGCTGGATTTGCCTGTGTCCTTCTTGTTGTCCTGTTTGTTCTCATCAACAAATATGGACGGCGGTCAAAGTTTGGAATGAAAGgaCCAGTAGCAGTGATCAGTGGTGAGGAAGACTCGGCTAGCCCTCTTCACCATGTCAACCATGGCATCATCACCCCCTGTACCCTTGACGCTGGGCCAGATGCTGTGGTCATCGGGATGACCCGTATCCCTGTCATTGAGAACCCGCAATACTTCAGACACGGACACAACTGTAATAAGCCTGCTACCTacgtGCAACACATAAAGCGTCGGGACATCATTCTGAAGCGGGAGCTGGGAGAGGGGGCCTTTGGGAAGGTGTTCCTGGCAGAGTGCTATAACCTCAGCCCTACCAAGGACAAGATGCTTGTGGCTGTCAAGACGCTGAAGGACCCCACCCTTGCAGCGAGAAAAGATTTCCAGAGGGAAGCGGAACTATTGACCAACCTGCAGCACGAGCACATTGTCAAGTTctacggtgtgtgtgtggatggagacCCCCTCATCATGGTCTTTGAGTACATGAAGCACGGAGACCTCAATAAGTTCCTCAGAGCTCATGGGCCTGATGCGTTGATCCTGGTTGACGGACAGTCGCTGCAGACCAATGGGGAGCTGGGCTTGTCTCAGATGCTGCACATTGCCACTCAGATTGCCGCAGGGATGATGTACCTGGCCTCCCAGCACTTTGTGCACCGTGACTTAGCCACTCGGAACTGCCTGGTGGGCAACGGCCTGCTGGTTAAGATTGGTGACTTTGGAATGTCCAGGGACATCTACAGCACGGATTACTACCGGgtgGGAGGCCACACCATGCTGCCCATCCGCTGGATGCCCCCTGAGAGCATAATGTATAGGAAGTTCACCACAGAGAGCGACGTGTGGAGCTTCGGTGTCATCCTCTGGGAGATCTTCACCTACGGGAAGCAGCCATGGTTTCAACTGGCCAACAACGAGGTCATCGAGTGTATTACGCAAGGACGGGTTCTGGAGAGGCCACGAGCTTGTCCCAAGGAGGTGTATGACATCATGTTGGGTTGCTGGCAGAGGGAGCCCCAGCAGAGGCTGAACATCAAGGACATCCAGAAAATCCTTTATGCCTTGGGAAAAGCCACACCTGTCTACCTGGACATCCTGGGCTAGTGTATGTTGAGTTTTGTCGATCTGTCTGTTTTGTTGTCTGTCTCTACCCAACAGATGAATAAAAACCCAGGAATAACTCAAGCAACGAGTACCTTATTGCTCCACTGGCAAACACCTACAAAATGGGGATGGACTTAAGTGCCTGCTACTCCTTTCGATACACTGGATAACAGTCTTAAAAAAAAGCACTTTTACATTTTGTTTACCTGCATTCAAAAATGTACAGTTGCTGTATACTATATGAAGAGGACATACTTCAAGTTTTTCATAAAAACAGCCAACTTAAAGtatcacaaaaaaacaaaaacaaaaaacaggaaGAAAACGACCAAAAAAAACACCAAacaaattaaatttaaaaaagctGAAAACCCTGGAAATTTGTTTTGCTTTTGGGATCCTGCCATCTTGACAGAAGATCAAACTCCCCAGGTGATTTTCTTTTTccttttataaatatatattatatatatttttaatttatttttattttcaaagtGTGGATATCTGCCATGTTTCTCGCTAAAGGTACAGTATGTCACATGTTGGAGATGACTGCTTGATATTGGCAAGTCAGACAATTGGCAGGGACTTATTAAAGTAGGCCTTACTGCACTCTGATTGGCTGGATCTATCTTCTGACTCTGGATCCAACGAGGTGATTAGTTACTGATGGGAAACAGCTTTTCACTGAGACGTGGAACTCATAGAAAAGACAGAGCCACCAATCAACACAGACATCTTAATTTAAAATtgaatgtatatactgtacatttctaTGTCACAAAAAATATGTTAACTTATTTCATTTCCTATTTAGACTATTTTAGTTTCTTGATgtgttgttatggtgagtgaattcTATAGATATTTTGATAATCTTTCATTTTTTGTTACTATGTTATTTCTGTTGGTTTTAATGAATTTCATCTACTTTTATTTAGGCTTATCATTTTGAACATGTGATTATAATGTGACATTGTGAGTCAGGATGTTAGGATGTGACATAAAGAGGATTTAGACTCAGTAGAGTAATCAGGACAGACTTTAAGCAAGAAGCATACAGTAAAGTAGAAAGTGATTATGAAGATCTTACATAGGCCCCCACTCCCTCCCATCCCAGCTCATTGTTTTGTTCTTTCAGTGTATTCTAGTAATAGTCATGTATCTCATGTACAGTACATCTAGCCAGTGAAAAGAGCTATAGCTATGATATTGCATTATTAGCTGTCAGTTGCTGCCTcctaaaaagtacatttttatgACATTGTAGTATACTTCATCTTGTTTTCCAGGTTGTGAATAATGTTATTCAACTGCCTTCAAATAGTCATGACCCTGATGTTTCAATTCTGTCAGTTTATACAATAGGCAATGCACTACTGGACATTATACACATTGTAACACTGTACATTAGTGCAGTACCTTCCTCTCATTTTCCATACTCTAAACACTTAGATTCAAGTTAAAGCATTCATCAAATGCAGGCTTGAGAATGTTTTCTTCTCTCAACGTGCACAAAGTTCCATTAAGCAAACAATCCTTTATGTTCCACAGCTCTCCCAATGTTAAACAACAGCAAACTTGGCAAAACACAGTGACGTGATTTATTCATTAAGTAGTAGTGATAGAGCACTCTGTAGCTATGGGGGCTGTTTGAAACATTGCACTGTGATGACAAACACTGGGGCTTCGGGAGAaagtgctctctctccctctctcctctctctcgctgctcCTGCTTTTGCAGAGTAATGTGAATCATTCAAGGTTGTGTTTGGTCTCAATAACACCCCAATGATACATCCATAATTATTCAATGCTGAGCCATACTGGCACCATGTTTTGCCTATCTGCATTTTCTTTAACAAGGAGAGATATTATTTTGTGATCATTTTCATATTAACATTTATGTACACAATCATTTGTCTACttcaacaaaaatgtattttaaaagttTCAATATGAATTCTCTGGTCAAAACGTACAAATAATGTACTTTTATTTCAATGAAAAGTTCCTTCATGTTAGAATGGCGACATACTCAACGCTTTCTCATCTTTTTTTGCAAGTACTTCAAAAGAAGCTTTTCCATTTTCTGCCTACTCATCACAACATCGCAAAAACTCTCCTTCGCCTTACTCTCTGAGTTCACATCTGCAAAGTTTCCGAGGTGCATCCGACTATAGGAATGGAAAGTGACTGGAACATTTGCCTACTGTCTGCATTGACTGACTGTCTACATTGACTGACTGTCTGCATTCAATGACTTCACAATGCACCGGCATGCATCCTGATCTCCCAGGCAAAGTAAACGAGGAGATTTCCCCTGGTAGTACACCACACAACCCTATCCTGCTCCTTCCTATGATTGAATCTCCGCTAGTTAACAACTCTGCCCTCTTCCTTTCCTAACACCTCCTCCATGGATGAGTACACAAATCCAGCACAGGCTCAAATAGAGGCACACTTTACAAACTCGTtataatttaaataaaataacataGGGTGACTTTCACTCATCAAATGGAGTGCACAGAGCCCATTCATGCCGGATTAGGTCCTAATTGGAAGGAAACAGACAAAGGTCACTTCTGAGGATGTTGCAAAAAGATCCTATAGGAACCAACAGACTCAGAGACATGTTTATCAACAGTCTGCACAACACTAGATTGAAAATGTTTACAAGTATAGTAGACTTTGAGGAAAGGAACATTTAGGCATTGGTGTTACAAGGCGACGACATTTCTAATAACATAAAGAACACTACACATTGATTGTCTGATATAGTATTTTCAGTCATTCACATTAGATagtttcattacaatatttaaTAATGAATCACTGaaataaaaaacatgttgacaTTTACTTTAGCCCCCTGATAATCCCCTGACAGCCCCCTGATAGTCCACTCATAGTCCCCTGATAGTCCCCTGATAGTCCCCTCATAGCCCCCTGACATCACCCTGATAGTCCACCGACAGGCCGCTGATAGTCCACTCATAGCCCCCTGATAGCCCCCTCATAGTCCACTCATAGCACCCTGATAATCCCCTGATAGTCCACTCCTAGCCCCCTGATAGTCCACTCCTAGCCCCCTGATAGTCCACTCATAGCCCCCTGATACCCTGATAGTCCACTCCTAGCCCCCTGATAGTCCCCTGATAGTCCCTTGATAGTCCACTCATAGCCCCCTGATAGTCTCCTCATAGCCCCCTGATAGTCCCCTCATAGTCACCTCATAGCCCCCTGATAGCCCCCTGATAGTCCCCTGATAGTCCCCTGATAGTCCCCTGATAGTCCACTCATAGCCCCCTGATCCCCTGATAGTCTCCTCATATCCCCCTGATAGTCCCCTGATAGCCCCCTCATAGCCTCCTGATAGCCCCCTGATAGTCCCCTGATAGCCCCCTGATAGTCCACTCATAGCCCCTTGATAGCCCCCTGATAGTCCACTCATAGCCCCCTGATAGTCTCCTCATAGCCTCCTGATAGCCCCCTGATAGTCCCCTGATAGCCCCCTGATAGTCCACTCATAGCCCCTTGATAGCCCCCTGATAGTCCACTCATAGCCCCCTGATAGTCTCCTCATATCCCCCTGATAGCCCCCTGATAGTCCCCTGATAGTCCCCTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26776 lncRNA downstream 2205 23317952 ~ 23318866 (-) True G23175
TU26773 lncRNA downstream 7113 23313019 ~ 23313958 (-) True G23172
TU26541 lncRNA downstream 15088 23305706 ~ 23305983 (-) True G22943
TU26523 lncRNA downstream 26450 23294392 ~ 23294621 (-) True G22925
TU26517 lncRNA downstream 29101 23291748 ~ 23291970 (-) True G22919
TU27002 lncRNA upstream 6611 23626386 ~ 23626645 (-) True G23397
TU27108 lncRNA upstream 86009 23705784 ~ 23705984 (-) True G23501
TU27125 lncRNA upstream 98745 23718520 ~ 23718838 (-) True G23518
TU27129 lncRNA upstream 100833 23720608 ~ 23720812 (-) True G23522
TU27375 lncRNA upstream 121505 23741280 ~ 23741509 (-) True G23742
XR_002471552.2 mRNA downstream 364678 22921567 ~ 22956393 (-) False LOC110510264
XR_002471574.2 mRNA downstream 364679 22927354 ~ 22956392 (-) True LOC110510264
XM_021591764.2 mRNA downstream 364680 22915370 ~ 22956391 (-) False LOC110510264
XR_002471547.2 mRNA downstream 364680 22921567 ~ 22956391 (-) False LOC110510264
XM_021591382.2 mRNA downstream 624557 22655517 ~ 22696514 (-) False LOC110510003
XM_021592107.2 mRNA upstream 149518 23769293 ~ 23774865 (-) True LOC110510928
XM_036972413.1 mRNA upstream 201881 23821656 ~ 23861028 (-) False LOC110511130
XM_036972417.1 mRNA upstream 201881 23821656 ~ 23861029 (-) False LOC110511130
XM_021592530.2 mRNA upstream 322120 23941895 ~ 23945943 (-) True LOC110511707
XM_021592581.2 mRNA upstream 361440 23981215 ~ 24015777 (-) True LOC110511826
TU25921 other downstream 477766 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 938863 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 1773298 21535933 ~ 21547773 (-) True LOC110507736
TU23832 other downstream 2231821 21085468 ~ 21089250 (-) False LOC118945319
TU26999 other upstream 4251 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 202925 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 603132 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 932816 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 1244312 24864087 ~ 24864834 (-) True znf276

Expression Profile