RNA id: XM_036972417.1


Basic Information

Item Value
RNA id XM_036972417.1
length 6671
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110511130
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23821656 ~ 23861029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgcgttcaagagaACTGGGAAATCTCCAACTGGGAAAaaagttttgaacggtcatccaactcggaattcgcTGTCGGAAACTCTGGCATATTTCTAGAGCTCCggctttccgacctgaagatatctgacgtcatgatttgacctcgttttttccgagttcccagttgttttgaaagcgcCAATTGTTGTTATTCGTCTGGAACGAATATAAACGCGTCCCTGTTTAAGTTTACGACCAATAGGATTTAACTGAATCGTTTGCGTTTAAACTTTAACCCCTATGTTACTGGCTATAGTTTATAGGCTACATGCAGTTTATGGTCTTCTTTATTGGCAGACACTCAGAATTTCAACGAATACCGTGCGGATTCCCATCGAAAATGATTTTCTTACACTGGAAGTAAATGATCTATGTGTGTAATACTCATATGGTGTTTTGTTATTTAAATCTACTTCATGTAGTACTTGTTCCATAATCGACTGACGTGGGGACCTCGGAGGGTTGGTCGAGAAAGCCTGGATGACTGGATACTACGCTGAGCCTCGCAGTACAGTAACCCTACTCATGCTTTTGTTTATAGACTTTCAAGTGATTATCGCTTTGGTTACATATTTCAACAATGTCGCAACTGGCCTGTAAACAAAGAAAGACGACGTGCTGTAATTTATTTTCCCGAAAACTCATGGTCGTGGATAGTCTACATTGAATACGATTATTGTCAACCAAATAACCAGCGTCATTGATCCAGGTGGACGTTTACTAACTGTTCAGGCAGGTTTCTGCACGCTCTCTGTTTAAAGGTTAGGCTACTTGTACCGTAAATGGAGGTTTGTCTTGACTAATTTTTGTATTACCATTTTATTATTGTTAGGCCTAATCGCAATCAACAAAATAATCCATGTTTAAACGTATGAGTCGATTTTAAAATGGTTGAAAATCGATGCTCCGTTCAAAGGGAAGGGGTCTACCGCTGGTTTTCGATATTGAACTCGGCCCAGAGAGCTGAGTTCATTTGTGGTCTTTTGGACCTCTGTGTTCCCATCGAACTACGCTTCCTCGGGTCGTGCTTGGAAGATTTAGCCCGCAAGGACTATCACTCCCTCAGGGATGCCGAGATCAAAGCCAACAACCCCGCTGACCTCTCGAACCTTACCAACATCACGGACGAGGTCGTGAGGAGCAAGCTGCTTATCTCCCTTGCACTTCTCAGCTCCGACAATCGAGAGGCTGCGGGTGTTCTCTTCCGAACGCTCACGCACATCGACAGCATCATAAACAACTACGGCCTGCAGCTCAACGATGGACAAACGGATGAGCAGTTCCTTCTCCTCTTCACCATGGCATCCAATCACCCGGCATTCAGCTTTCATCAGAAGCAGGTGCTAAGACAGGAGCTGACCCAGATCCAGGAGATCCTGCAGGTCACCTGTGGAGAGCAGCAGCCCGGGACTGGTGGCTGCGACGGGACTGGAGCGCTGGACACCCTGTCTCCCGCCACTAACATCCCAACCTACATCACTGCGCCCACCCTCGACTCCTGTCAGACACTGCACCGAGACGTCGGGGCAGGGCGAGGGAACGAGGGAATTGTCCCAGAATCCATGCCTCACATGCCATCTCTCTcatgcaaggagctgccagtcaagGTGCACGTTGGGAAACCCAGCAAAGAGAACATAGAGAGGATAGAGCTGAGGGGAGTAACCAACAAGGGGGGGAAACCAAGTGAATATATGCTAGAGGTCAAATGGTCAGACTCCTCTGTGTCCACTGTAAGCAGGACTCACCAGGAGGTGCTGGACTTTCTCTCCCAGGTCTCCCAGCTTTTCTCTGATGAAGGTTTAGAGAAGTTCCTGCCTCAGTCCCCTGGCCTTGATCAGACCTCTGAGCTGGACCCCAGGTGCCTAACAGCGCTTCCAGTTCACATTCTCAAACACTACCGGTCCAGACTCTTCTTCAGCACTACTGCCCCCACCGTCCCCTCCTTTCTCCCAACTGCAAATCTTGGGTGCCTGCTTCAATACAGAGGAGCCAACAGGGCTGTGTGTGGTGTGGCCAGTATCCAGCCAGTTATGAGCATTCACAACTCCATTCCGCCTTGCTCTCCAAACCAGCTGCTCCCCCAGGGCACAGTGCCCACCCTTCCCCCCGGCACGGTGGGGGTATCAGGGGGGGACAACGCGCCCTCTCCCGGGCACCTCCAGAACCCTGGCCCTCCACAGATGAGTAGCCCTGAACAGAATGGCATCCTGGACTGGCTGAGGAAACTCCGCCTGCACAAGTACTACCCAGTCTTCAAACAGCTGACCATGGAGGAGTTCCTTGGACTCACAGAGGAGGATCTGAACAGGTATGACCTCACCCAGGGAGCCAAGAAAAAGCTGAAGACGCAGCTAGAACTGCAGAATAGGGAGAAGAGGTATATGATGTCCCAGTTCCCTGTGTCCTGTAGTGGCATCGCCAGGGTTACTCCATCCAGCCACATTGGTCCAGTGGCACAAGTCCACTCCAGCAACAACACAGaGCTACGTGTGGAGGTAGAGACGGGCATGCACCCTCTCCCCCGGGACAGCAGCTCCTCCTCGGGTTATTCCAGCTCTTCCTCCAGCCCCAttacccctctgtctctgtctcgggaAGGGGCCTTCGACAGGGCCAAGGAGCCACACAGACGTATGGGGTCAGGACTAGACCTCGGAGAGAAGGACAGGACATGTGTTCCCCTGAACCCCACCGTTACAACAGGTCCTAGTCGGCCCACTGCTCAGGTTCTTCCCGTGCAGAATGATCCTACTCCCTGCCCCTCCCACATTGGCCTTCCTCCACCCTCCTTGCCCCTACTGTCACCAAGACGCATGCTGGGCTCCCCCCGTAAGTCCCGGCCCCCTCCCCTTTGCCCTAATGAGCGGGCCAAACCCCTGGGTTCAGGCGTAGCTGTTGGGGTGCGGCTTGAGAGCCTGTTCCCTGGCCTGAGTGTGGACAGTGTGGGGTTCCCTCCCCTCCACCAGGATTCTGCTGGGCCCCGGGGGCCCTCTGGGGTCACCATGCTGCGCTCCCTTCCAGGCATGATGGTGGAGACCAGCACCGCCCTCACCACCACCTCTAACACCCTGCACCACGTCTCACACCCCCCTCTACACCTACAGGTGTCCCCCTCCTTACCCCGTGCTGGACACTACCCTTACCCGtcttcctccgcctcctcttcctcATTATCTCCCTCCTTTAAGTCAGCCTTCCCATCTGTGAGTGGCATTTCCATGGGAACCGCGAGCAGCGTTCCCATAGCAGCGGTGCCAGGCAACACCTATTGTGTCAACAGTAGCGCTGCTGTCCTGCCAAGCTCCAGTCCCACTTCCACAGAGAAGAGTGGCTACACCATCGCCTCTGGCTCCACCCCAAGCCcatctgtgtgcgtgtgcagcTCCTGTGGTTGCAGTGGGAACTGTGGTTCCTACGGGGCCCTCCCGGCCAGCTACGCAGGGTACTTCCAGCACCCCTTCTCAGGGACGTCAGTGTTCACCCTGGGTCCCCTGCTTCACCTCAGTCCCCTGCTGGCTGGGAGCAGTACTGCCTTCCCCTACCCCCTGGTGGCACCGCCCCTCTACAACAGCAGCATGTCTCACAGCCATGACACACAGGGGCAGCAGGGGCTGGTCCTGCCCCCCATGCAGGGATTTCTGGGTGCCGGGGCCAACATGTACCAGCCTCATGGAGTGGTGGGGAACGGAGGGCACAAGAAGCCAGAGAGCCTGTCCTGCTACAACTGTGGGGTCATCGGCCATCGGGCACAGGAATGCAAGCAGCCACCCATGGACGCTGCTCAGCAAGGCACATTTCGGCTGAAGTATGCTCCTAAATCAGACAGCCAGGACTCAGGGGACTAAGAAAAACTCCTGTGATCTCACACCTGGGCACATCAGCACCTTATGTTCCTCAGATTGGAGGAGCTCCTTTCATAACGTGACTCTTTGAACACCAGTCACAGTTTTGATGGTAGGCTGGTGAATGGTGGCCACTCAACTCAACTTAGATTCTTGCTTGAGACCATGAAGAAAGTGAAATTATAGAGTCAATTTGGAGGgtgctattttttatttttttaaatatatttttttacctttatttaactaggcaagtcagttaagaaccaattcttgttttctatgacggcctaggaatagtgggttaactgccttgttcaggggcagaacaacagatttgtattAGTTCCAGTCCATCTATAACAGATGATTTTGGTCaaaggaaaaaataaaaatatgacaAAACTCCTCACGCTACTCAGGTCACACCTCAGTGTCACTCAGTTCTGTAGCCAGACCCAACCCTTTCAAAACAAGTCATGTACTGTTCTAAGACAAGATGGCCTTTTAAATTGCTCTGGAGAAGAAAGTTGGATGTATATCTGAGAGGATGATGAAGTGTGAATGTAAAGACATAAGATGACTGCCAAATAATGCACATTGACTGACTGTCTGCCAAATCCTCCTCCTCTGGAACAAAGCATGTCTCTGAGGAAACAAGGAAGTACTTCTGTCATTTCCCTTTGTGTTGCCAGACATCACAGGGGAAGAGGAAGTGAAACAAACAAGTGCTTTATGCAACAAATCATTCACTGTGGGTACTTAGCCCTGTACAGTGCAGGTATTAATGATGAAAAGAAACAGATGGTGCCAGCATTACTAAGATGTGCCATTGATTTTGTTTTGTGCCGAACTGCCTGGAAATGATTCCAAACTTGTTTAATAATTTAGAAGTTTAGAAGTTGGAGCAGTCTAATTGTTATAATCACCACCCAAAATGGGTGGTGGTGAAATGTAAGAGGATCCTTTTTGAGAAAGATTAGATATTGAATGTGTCAGTGAATGTCTCCTTAAGTTGCCACCATGGTGTGGCATGTGAAGCACTTTTATGAGACTGGCTGGTCCCAGGCCATTGGATGTGAGTGTGACATGAGGACAGTGGTCTTCAAGGATGGACAAGTTATTATAGGTTTGTTGTGTTGCACTGGAGTGTCTTCAGTCATAAGGGACATTTCTTTGATAATGATCATATGTACCAATAAACACTTGCACCTATTGCTTCCAATATATAGTCAAGACTTTGACTAAATCAGGATCCACTTGGAGTTCCATTCTGGTGGATGTGGTATTTGTAGGTAAGGATCAGGAAGTGGTCACTGAAGATCAAGGAATTGTAGGACAATCCAGGATTGTATCTTGACTATCTGTACAGTATTGCATGTCAGGGACTGTTGTCAAAAATGTTTTGACCACATCCATGCTGTTTATGGTCTAGGTCTCATGGGAGTAAGAGAGTTTACAGTAGGCACATTATGGCTGCAGAGCAAACATGATTCTCTGGTGgatcatttgtttttacactgttcTGTAACATTGTGTTTAGTTAATACACCCAGGTTCATGCTGCAAACATTTTGTGTAAACCAATTAGATTTATAATCATGTCTTTATATCATTAAAATGAAATAGTGAAATTATTGACCATAGGAAATCACGTTTGTGCACAAAGCTGTGCATCCTAGATGCCTTAGCAACCCTGCATGGTACAATCATTTACTAAAGAAAATGTATGGCCATAATAAAATGATACTGTATTTTTGCTTCTGGAACGGTTTCAGCTTACTTGGTTCCAATGAGATTCTTGTCAAACATATAATGACATCTAATTAGCTGGTATTATTTGACTGTAACGTAGCAGTTTTCTTAGTCAATAGCTATGCATGTTTGATTTAAAAGGTGTTTTAAAACATTTGGTATTATTGTGAAGCAGATTTGAACTTGAAGGTCAGATCCtgttttatttttgtatatacTTGTTTTATATActgcatgaaaaacatattttgttTTCTGATTTCATAATTTCATTGGCAACACCGTGTCTAATACCAGCATAGGCGTTCTAGATGGGGAACACACCACAGAaacgtttacattttttttttattcataaaATATGAACATAAATACAAGAAAAGGTTGTAATACTGCTGTAAATATGAAGAATGAGTGGCAAACACAGGAGAATGCAGAGGAACATTGGGTTGATAACTGTACCATTCCTCTGTTATTAAACCCTCAATCAAACTGATCATAGAATCATTCTTATTCATTATGCACAAGTATAGCATATGGACATTTGTACAGCGAAGCAAAATCACATTGAATGAAAACAAAATAAAGATGGAACTGCCAAAAATGCTGACATAAAAAGGCATCTAACATTTTAAACAGTTGAGGACAGCAAAAGGGAAGAGGACACAAGTCATCACACATTATAAAGGCGTAAATAACCCTCTATTAAACAAATTGAATATTCTAAAAGTGTGATGCCACCCAGAGATGAGCTCTGTCCGGAGCCCTAGGGCAGGTCTAGGTGGGGGAGAGATGGACAGACCCAGCCCATGATGCCCGCCCAGTCCTAACTGGCCACCAACCCCACATCAGTGACCCTTTCAACACACGTGCAATTCCATCATCATGTCCTATCATAGTGATCAAGGTCAGTTTATTATTCCTTTCATTTGTCCAATATCTGTACACACACAGAGGCAAATCTCTTATTACAATCATCAAAGCAGATTTTCGGTAGCATAgcattttaaaaaaaacttcttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27425 lncRNA downstream 13595 23806903 ~ 23808061 (-) True G23785
TU27424 lncRNA downstream 17154 23804299 ~ 23804502 (-) True G23784
TU27404 lncRNA downstream 44402 23776794 ~ 23777254 (-) True G23768
TU27400 lncRNA downstream 52495 23768999 ~ 23769161 (-) True G23765
TU27375 lncRNA downstream 80147 23741280 ~ 23741509 (-) True G23742
TU27476 lncRNA upstream 40641 23901670 ~ 23905158 (-) True G23830
TU27477 lncRNA upstream 45868 23906897 ~ 23907116 (-) True G23831
TU27478 lncRNA upstream 47228 23908257 ~ 23908561 (-) True G23832
TU27479 lncRNA upstream 47883 23908912 ~ 23909237 (-) True G23833
TU27484 lncRNA upstream 51853 23912882 ~ 23913107 (-) True G23838
XM_021592107.2 mRNA downstream 46791 23769293 ~ 23774865 (-) True LOC110510928
XM_021591923.2 mRNA downstream 201881 23321071 ~ 23619775 (-) False LOC110510575
XM_021592530.2 mRNA upstream 80866 23941895 ~ 23945943 (-) True LOC110511707
XM_021592581.2 mRNA upstream 120186 23981215 ~ 24015777 (-) True LOC110511826
XM_021592720.2 mRNA upstream 173196 24034225 ~ 24047501 (-) False LOC110512077
XM_036972886.1 mRNA upstream 173196 24034225 ~ 24049430 (-) False LOC110512077
XM_021592683.2 mRNA upstream 173196 24034225 ~ 24049433 (-) True LOC110512077
TU26999 other downstream 197307 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 978351 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1439448 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2273883 21535933 ~ 21547773 (-) True LOC110507736
TU23816 other downstream 2732406 21086177 ~ 21089250 (-) False LOC118945319
TU28304 other upstream 361878 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 691562 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 1003058 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 1067319 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 1083879 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile