RNA id: TU27396


Basic Information

Item Value
RNA id TU27396
length 2292
RNA type TUCP
GC content 0.56
exon number 2
gene id LOC110511130
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23821656 ~ 23861029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTGCCAAGCTCCAGTCCCACTTCCACAGAGAAGAGTGGCTACACCATCGCCTCTGGCTCCACCCCAAGCCcatctgtgtgcgtgtgcagcTCCTGTGGTTGCAGTGGGAACTGTGGTTCCTACGGGGCCCTCCCGGCCAGCTACGCAGGGTACTTCCAGCACCCCTTCTCAGGGACGTCAGTGTTCACCCTGGGTCCCCTGCTTCACCTCAGTCCCCTGCTGGCTGGGAGCAGTACTGCCTTCCCCTACCCCCTGGTGGCACCGCCCCTCTACAACAGCAGCATGTCTCACAGCCATGACACACAGGGGCAGCAGGGGCTGGTCCTGCCCCCCATGCAGGGATTTCTGGGTGCCGGGGCCAACATGTACCAGCCTCATGGAGTGGTGGGGAACGGAGGGCACAAGAAGCCAGAGAGCCTGTCCTGCTACAACTGTGGGGTCATCGGCCATCGGGCACAGGAATGCAAGCAGCCACCCATGGACGCTGCTCAGCAAGGCACATTTCGGCTGAAGTATGCTCCTAAATCAGACAGCCAGGACTCAGGGGACTAAGAAAAACTCCTGTGATCTCACACCTGGGCACATCAGCACCTTATGTTCCTCAGATTGGAGGAGCTCCTTTCATAACGTGACTCTTTGAACACCAGTCACAGTTTTGATGGTAGGCTGGTGAATGGTGGCCACTCAACTCAACTTAGATTCTTGCTTGAGACCATGAAGAAAGTGAAATTATAGAGTCAATTTGGAGGgtgctattttttatttttttaaatatatttttttacctttatttaactaggcaagtcagttaagaaccaattcttgttttctatgacggcctaggaatagtgggttaactgccttgttcaggggcagaacaacagatttgtattAGTTCCAGTCCATCTATAACAGATGATTTTGGTCaaaggaaaaaataaaaatatgacaAAACTCCTCACGCTACTCAGGTCACACCTCAGTGTCACTCAGTTCTGTAGCCAGACCCAACCCTTTCAAAACAAGTCATGTACTGTTCTAAGACAAGATGGCCTTTTAAATTGCTCTGGAGAAGAAAGTTGGATGTATATCTGAGAGGATGATGAAGTGTGAATGTAAAGACATAAGATGACTGCCAAATAATGCACATTGACTGACTGTCTGCCAAATCCTCCTCCTCTGGAACAAAGCATGTCTCTGAGGAAACAAGGAAGTACTTCTGTCATTTCCCTTTGTGTTGCCAGACATCACAGGGGAAGAGGAAGTGAAACAAACAAGTGCTTTATGCAACAAATCATTCACTGTGGGTACTTAGCCCTGTACAGTGCAGGTATTAATGATGAAAAGAAACAGATGGTGCCAGCATTACTAAGATGTGCCATTGATTTTGTTTTGTGCCGAACTGCCTGGAAATGATTCCAAACTTGTTTAATAATTTAGAAGTTTAGAAGTTGGAGCAGTCTAATTGTTATAATCACCACCCAAAATGGGTGGTGGTGAAATGTAAGAGGATCCTTTTTGAGAAAGATTAGATATTGAATGTGTCAGTGAATGTCTCCTTAAGTTGCCACCATGGTGTGGCATGTGAAGCACTTTTATGAGACTGGCTGGTCCCAGGCCATTGGATGTGAGTGTGACATGAGGACAGTGGTCTTCAAGGATGGACAAGTTATTATAGGTTTGTTGTGTTGCACTGGAGTGTCTTCAGTCATAAGGGACATTTCTTTGATAATGATCATATGTACCAATAAACACTTGCACCTATTGCTTCCAATATATAGTCAAGACTTTGACTAAATCAGGATCCACTTGGAGTTCCATTCTGGTGGATGTGGTATTTGTAGGTAAGGATCAGGAAGTGGTCACTGAAGATCAAGGAATTGTAGGACAATCCAGGATTGTATCTTGACTATCTGTACAGTATTGCATGTCAGGGACTGTTGTCAAAAATGTTTTGACCACATCCATGCTGTTTATGGTCTAGGTCTCATGGGAGTAAGAGAGTTTACAGTAGGCACATTATGGCTGCAGAGCAAACATGATTCTCTGGTGgatcatttgtttttacactgttcTGTAACATTGTGTTTAGTTAATACACCCAGGTTCATGCTGCAAACATTTTGTGTAAACCAATTAGATTTATAATCATGTCTTTATATCATTAAAATGAAATAGTGAAATTATTGACCATAGGAAATCACGTTTGTGCACAAAGCTGTGCATCCTAGATGCCTTAGCAACCCTGCATGGTACAATCATTTACTAAAGAAAATGTATGGCCATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27425 lncRNA downstream 14639 23806903 ~ 23808061 (-) True G23785
TU27424 lncRNA downstream 18198 23804299 ~ 23804502 (-) True G23784
TU27404 lncRNA downstream 45446 23776794 ~ 23777254 (-) True G23768
TU27400 lncRNA downstream 53539 23768999 ~ 23769161 (-) True G23765
TU27375 lncRNA downstream 81191 23741280 ~ 23741509 (-) True G23742
TU27434 lncRNA upstream 3181 23829672 ~ 23829900 (-) True G23794
TU27436 lncRNA upstream 4651 23831142 ~ 23831345 (-) True G23796
TU27439 lncRNA upstream 12743 23839234 ~ 23839531 (-) True G23799
TU27441 lncRNA upstream 15742 23842233 ~ 23842800 (-) True G23801
TU27444 lncRNA upstream 19468 23845959 ~ 23846180 (-) True G23804
XM_021592107.2 mRNA downstream 47835 23769293 ~ 23774865 (-) True LOC110510928
XM_021591923.2 mRNA downstream 202925 23321071 ~ 23619775 (-) False LOC110510575
XM_021591958.2 mRNA downstream 202925 23321071 ~ 23619775 (-) False LOC110510575
XM_021591998.2 mRNA downstream 202925 23321071 ~ 23619775 (-) False LOC110510575
XM_021592045.2 mRNA downstream 202925 23321071 ~ 23619775 (-) False LOC110510575
XM_021592530.2 mRNA upstream 115404 23941895 ~ 23945943 (-) True LOC110511707
XM_021592581.2 mRNA upstream 154724 23981215 ~ 24015777 (-) True LOC110511826
XM_021592720.2 mRNA upstream 207734 24034225 ~ 24047501 (-) False LOC110512077
XM_036972886.1 mRNA upstream 207734 24034225 ~ 24049430 (-) False LOC110512077
XM_021592683.2 mRNA upstream 207734 24034225 ~ 24049433 (-) True LOC110512077
TU26999 other downstream 198351 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 979395 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1440492 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2274927 21535933 ~ 21547773 (-) True LOC110507736
TU23832 other downstream 2733450 21085468 ~ 21089250 (-) False LOC118945319
TU28304 other upstream 396416 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 726100 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 1037596 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 1101857 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 1118417 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile