RNA id: XM_021592581.2


Basic Information

Item Value
RNA id XM_021592581.2
length 4947
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110511826
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23981215 ~ 24015777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGGAGGTACTTCTATGCACGCAACAGCGCGAGTTCACACAAGATTAGGCCTACCGGACTGAGAAGccagaaaaataaaaacatttacagatgctatcacaggtgcagcgaaatgcttgtgtttctgactccaacagtgcagtaataatagCCTACCTATCAATAAAACTGaaaataaagttaaaataaataaataggctaTCATGCACACATGAAGCACTCCAAACCAAAGACAATTAAGAAATGGACAGAAAACTGGTAAATATAATTAAATAAACCTTATCTCCTTTCACACAAGTGTAGCACAGTTTGCGAGCTATCCAAATAACGTGTCCACTTAAATAAATAAAGCCGTAGGCTAAATTAATGTAATAATGTGAACTATGGGAAATTACTGGAAATGGCAAGGATTAACGGGATATTGGATAAACATTAATAAACAaagggcaaacaattcacaccATGGAATAATTCATTCGCACGGATTGGCGGGAGATAGTGAAGATTGTGGAGAAAGAGGCACATACTGTTTCTTCGCCACAATGCCCTTTCTAGTATTACAATTCACTAATGCCTTGAAAGTACCAATAAAACCAGTTCAGCTAGTTTGGCAGTTTGGCCCTGTCTGAGACATCATTTGAGGCCAAAGCATCAGTAGAGGGCGCAAAAGCTTTGGTCTCGCATTGAGCAGTATGTGGGGTGGATTTGTGACGCTGTCATGAAAGGAGAAATGGAAGAGGCTGTCCTAGACAGACCATGAAGCTTTATACTAAAATCCTTTATACACAGAGTTCCGTTGACACAGCACAGAACACGTGTTTCTGTGTCAGCATCGTGTCTTTGCACTTCAGGAGCGACAGACAGGATCATAAACATTCAACTGGAGAAGAAAGAAAAaagggagagacacagacaccaaGCAAAAAGCCGTGTCCCCACAGGAGCGAGCAATGTCAAGTTTAAAGAAAAGATATTCGAATTCGTCAGCCGAACGGGATGTGGAAGACAAGGAGGTTACGGAGAAGATGCTCTCTCCAGTcggaggagagaatggaaactCAAGCCCGGATAAGGTACCCGGGGAAGAGAAGGTTGTCCTAGAAAGAACCATTACCCTGGTGAATGGCGTAGCTATCATAGTGGGTACCATTATCGGCTCGGGTATCTTTGTGACCCCGACTGGAGTGGTGAAGGAAGCCGGGTCCGTCGGACTGTCCCTTGTCGTTTGGGCAGTGTGTGGGGTATTCTCAACCATAGGTGCACTGTGTTATGCTGAGCTGGGCACCACTATTTCCAAATCAGGTGGTGACTATGCTTACATCCTTGAAGTGTATGGTTCCCTGCCGGCTTTCCTGAAACTGTGGATCGAGTTGCTCATCATCCGCCCGTCATCGCAGTACATTGTCGCGTACGTCTTCGCTACCTACCTTCTCAAGCCAATCTTCCCTGACTGCCCTGTACCCGAGAATGGGGCGAAGCTGATCGCCTGTCTTTGCATCTTGCTATTGACTGCTATAAACTGCTACAGTGTGAAGGCAGCCACGCGGGTCCAGGATGCCTTTGCAGCTGCCAAGCTCTTTGCCTTGGGCCTCATCATTATTATTGGTTTTGTGAAGATTGGCAAAGGTGACACAGTCAACCTGTTACCAGAAAATTCTTTCAAGAATTCAAACTACGACTTTGGGAACATTGGACTGGCCCTGTACAGTGGTCTGTTTGCGTATGGGGGCTGGAATTACTTGAACTTTGTTACAGAAGAAATGATTGAACCTTACAAGAACCTGCCTCGTGCTATCATCATCTCCTTGCCCATCGTCACTGTGGTGTACGTACTGACTAACCTGGCCTACTTCACCACTCTGAGTCCAGAAGAGATGCTGAGCTCTGAGGCTGTGGCGGTGGACTTTGGAAACTACCACCTGGGCCCCATGGCTTGGATCATCCCTGTGTTTGTGGGACTGTCCTGTTTCGGCTCTGTTAATGGCTCTCTCTTTACATCATCCAGGTTGTTCTTTGTGGGCTCAAGAGAAGGCCACCTCCCCAGTCTGCTGTCCATGATCCACCCCGACCTGCTGACCCCTCTGCCGTCACTCATCTTCACATGCCTCATGACGCTGCTGTACGCCTTCTCCAACGACATCTTCTCTGTCATCAACTTCTTCAGTTTCTTCAACTGGCTCTGTATTGCCATGGCGATAATCGGCATGATGTGGCTGCGCTACAAGAAACCTGAGCTGGAACGACCAATTAAGGTGAATATCCTGCTGCCTATCAGCTTTGTCCTGGCTTGTATGTTCCTCATCGTGGTGTCCATCTGGAAAACACCTGTGGAGTGTGCCATTGGCTTTGGCATCATTGCCACTGGAGTGCCAGTCTACTACATTGGCGTTTGGTGGCAAAACAAGCCCAAATGGCTCCTTCAGTTTATCTtctcttccACGGCGCTTTGCCAGAAGCTGATTGGGGTGGTACCACAGGAATCCTGAAGAGGAGCTAAAGCGACGAAGCCCCTCGACATACAACCCCAGTGACCACTTATCTACCCCCTCACCCCTGGAGGCACCTGCTCCCAGTCTACACCCTCACTCAGCCCCCATCAATGTTTTTTAGGTCTAATCATTCCTTCTGATCTCCTAGTGTTCTAGTGCAGGAGAGCCATGCTGCTAGACTGCTGTGCCCAGCACGGCCCCCCTCCACCCTGCACATACTGTAACTGTTGGGATACCTTCAGACAGGTTTTCACTGCAAACGTTGTTTCAGTCTTCAAGATTTTGTTGATCTTGAATGTCTTTGTACCGAACCACGGCTCACAAGTGTTGTATTTATGAGGATTATGTAACTTCTGTTTACAGAAAAATTTCCTCTCGTTCAAACTATTCTTTCACTGAAGGTTTGGCATCCCTGTGTTCATATAGTTGCAATCTGTGCTTTCAGTCAATTGTGATGTGTGGCCTGGCTTGGTGCTAATTCCTGGTAGGCCAAAGCTAGAATTGTTGTTCAGATTCACTGACTCACTGTTTCACAGTTGTTCTGCCATTACCCAGTTAGTGAGTCAACTGCTTCCCAGAAGGGCATCGTGTCTGTTTGTTGCCATGGCTTCTATTTCAGCAGCTTACAGGCTGTTGAACGCAGACATTATGTGTTGTAGTCTGGGTGTTTGTTTTTCTGTATGCTTTTGTTTTCAGCTTTTTTTGGGGAAAGGTTTAATGTATCTGTAAAGGATAGCGAAATATCAATTTGATTATACTAGTGCCTCTGATAAAGCCAAGGCTATTCAGTTCCCTGACTACAGACACACTTGAACTCATCTGACCCCTGAGAAGCTGAAAACTGAGGGAAATGGACGTGTAACAGTGGTTGGAGCGTAAGTGTTATAATTCTTATATGATAGCACCCCTCCCCATCTACGGCAGATCAGACTGGCTCACTGCACCCTGTGCACCATGTTGTAAATCCCTGCTTTGGCCGTTATTTTTAAAATCTTTGTAGATATGAATTTCTACTTTCATGAGGTAGATGCAGTGGAGCTTTTTTttaatgctgtcaattaactttttTGTATATCCAAGGACGTCTTAGTTTCCCGAGAGATTACTGGTTCACAAATAGACCATGCATGGGacataattattataattatagtTATTTTTACAACTATTCCGAGTATACAAATTACAGAGACCCTTTTGCTTGTCTGTAGATTTGTCATTAAATCACCAGTAGCCTTCCGACTGTACCATGTCTTACCTCAGTGGACCTACAGTATCACAGGAATATAATATAGCTGGTTGTAAATCTTACAAATATAacatcatgttttttttaatgctgATGTAATACAAACTTGTGAACATAATAGTTGTCTGCTTGAGCTCAATCCAGACTACATACATTACGAGCAAGGATTTCATTTGTTCTTAGATCACAATGATCTTGTGGGTATCATCAGATGCACATGGGTATTGTTGCTATTAACTACTGTTATGTCGAAGAGTTTTAAAACAGGACAGGTTGTAACCAAGGCCCCCAATAGGAACACTGTCACAGTGACTACTTTTTACCTGTGACAAGGCTGGCTAATAACCTCCGAATTTTGGGTTAGAATGGGCTATTGTGGGTGTGTGCATGTCTTAGAATAGGGTCACAGCTGTAAAGATGATTTAATTGTTTTAGTGTGTCTGTTTCTGCTTGCATGTGTCTACTGTACGTTGTCACTACTGTCAGCAACTATCAACTTCATAAAATGATTTCTACATTTAAGTGTGATGATGAGATTTGTGCGGTAAAGGTTTAATGAGGTATGGACCATGGTTGTTGGAGATGTGTGGTTTCCCCGTCAAAAGGTGGGTAGGCGGGCAGGGCATAGCAGAGCAAAGGTTAAAACCACAGTCTTTGGATACAGATGCCTCAGAGGGTGGGACAGGGGAGACACAGGACTGGAGGTGGATGGTTGACAAGATTATTAATTCattgttatttttttgctgaAAAAGAAAATTTCAAGCGTACTATATTAACAAAAATCATCCTGCAGAAGCTTGTCCAGACCTGTTTATTTGAATGTGTTCCTCCACATTGTGACACAGTAAAGCTTTGTAAAGCCAATGACATGTGTTGTGCTATAGACCACGTGGTCACTGTGGTAACCATATAGCTCATGAGTCTGACTTACCATTGGTTTCCTGGAGGATGTGTCATTGTATGTAGAACAGCAGAATGTCTTGCTAACACTCCAGCCATCAGAAGATGTTAACTAATTTAAATAGCACTGTAgaaggttttatttatttattgtaggATCTGTTAGTCCCCACATTTTTTTACAGGGCATTTGTTAAAGTGCTTTatgaataaatatttttttccataCGTGTATGTATTGTCAAATTTTTGGTCTCCTTTATCCTGTGTTCTTATCATGTTAATAAAATATGTTTCAATGCAA

Function

GO: NA

KEGG:

id description
K13780 SLC7A5, LAT1; solute carrier family 7 (L-type amino acid transporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27485 lncRNA downstream 65857 23915118 ~ 23915358 (-) True G23839
TU27484 lncRNA downstream 68108 23912882 ~ 23913107 (-) True G23838
TU27479 lncRNA downstream 71978 23908912 ~ 23909237 (-) True G23833
TU27478 lncRNA downstream 72654 23908257 ~ 23908561 (-) True G23832
TU27477 lncRNA downstream 74099 23906897 ~ 23907116 (-) True G23831
TU27582 lncRNA upstream 59624 24075401 ~ 24075685 (-) True G23932
TU27590 lncRNA upstream 66315 24082092 ~ 24082376 (-) True G23940
TU28250 lncRNA upstream 76267 24092044 ~ 24092499 (-) True LOC118948024
TU28254 lncRNA upstream 80799 24096576 ~ 24096892 (-) True G24514
TU28255 lncRNA upstream 87771 24103548 ~ 24104450 (-) True G24515
XM_021592530.2 mRNA downstream 35272 23941895 ~ 23945943 (-) True LOC110511707
XM_036972417.1 mRNA downstream 120186 23821656 ~ 23861029 (-) False LOC110511130
XM_036972413.1 mRNA downstream 120187 23821656 ~ 23861028 (-) False LOC110511130
XM_021592107.2 mRNA downstream 206350 23769293 ~ 23774865 (-) True LOC110510928
XM_021591998.2 mRNA downstream 361440 23321071 ~ 23619775 (-) False LOC110510575
XM_021592720.2 mRNA upstream 18448 24034225 ~ 24047501 (-) False LOC110512077
XM_036972886.1 mRNA upstream 18448 24034225 ~ 24049430 (-) False LOC110512077
XM_021592683.2 mRNA upstream 18448 24034225 ~ 24049433 (-) True LOC110512077
XM_021592634.2 mRNA upstream 34532 24050309 ~ 24072410 (-) True uba2
XM_036973051.1 mRNA upstream 75827 24091604 ~ 24102924 (-) False LOC118948024
TU27396 other downstream 154724 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 356866 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1137910 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1599007 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2433442 21535933 ~ 21547773 (-) True LOC110507736
TU28304 other upstream 207130 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 536814 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 848310 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 912571 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 929131 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile