RNA id: XM_021592683.2


Basic Information

Item Value
RNA id XM_021592683.2
length 4217
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110512077
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24034225 ~ 24049433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTTACACGAGCCCCACTCAACGATCTCTTCCTTTTGGAACCACATTATCGCAAACACTTTACAAACAATATTTCACCTTCATTGATTCGGAGCGTGCGATAGCAGTAGGTAGCCAATATAAATCGCCGCGGTGTTAAAATCAATCAAGCGATAGTGTGGAGAGAGCCAGCCGGCAGCCATCCGAAACTGTCAGTGTGGAAGAAGAGGGGCCATAACGCAACTCGCGTTGTTGTTTCTGATTGAAAATATATGAAACCGAACGACTCGGGAGACGGGAGCAGTTTTAATTCGACGTTTTGCCTTACCTGAAAAGATAACACAACAGATCATTTTGACTCTCGCAAACTTCGAGTAGCCTATTTGAAGAACCGTGGTCATGGTGGCTCTCTCATCGATCGTAAACCCACTTGCCCGGCATCTGCAGAGACATGTCATCAAGCAAACTAAAGGTCAACGGTTGATACCTGTGAGAAGATGCAACCTCACTGCATGTTCAAGCAAATATGTGCTTTCAGCGTTGCATCCTATGTGGCAGGGACCACTTGTTGCTCCTGGGGGCAACAGACAATCTCCGATCGATATTCGGGTGCGCAAGAGTGTCTTTGATCCGCATCTCAAGCCGCTGACCCCGGATTACGACCCCAGGACATGTTCACAGATATGGAACAACGGGTACTCATTCCTGGTTGAGTATGATGACACCACCGACAAATCCAcacTTAAAGGGGGTCCTCTGGAGGACAACTTCCGGCTGTGTCAGTTCCACTTCCATTGGGGGGAGAGCAACGCATGGGGCTCTGAGCACACAGTGGACCGCCGCCTCTTCCCTGCTGAGCTCCACATGGTCCACTGGAACTCTGATAAGTACAGCCGGTTTGAGGAGGCGGTGATGGAGGAGAATGGACTGGCTGTTATTGGGGTTTTCCTCAAGATAGGGAAGAGACACGAGGGACTGCAGAAACTAGTAGATGTCCTACCTGCTGTCAGACACAAGGACAGTGTTGTTGAGTTCACTAGGTTTGACCCAGCCTGCCTACTGCCCACTAACATTGATGATTACTGGACGTATGCAGGGTCACTGACCACGCCTCCTCTGACCGAAGCAGTGACCTGGATTATCATGAAGCAGCACATCGAAGTCAGCCATGACCAGCTGGCTGTGTTTCGGAGCCTTCTCTTCACCTCAGCAGAGGAGGAGGTGCAGAAGAGCATGGTCAACAACTTCCGTGTGCAGCAGTCGCTGCAGGGCCGCACTGTGCGTTCTTCGTTTACCCCTTTCCTGAAGGAGGAGCCTTTACTCAGAGACTCACTTGGAACCTTCAAACCAAAATAATGCAATACCCTGGGAAGCACCATTTTGGCTAACAAAGTCTTACGTTTGACTCTACAGAAGTCATACTGCTGGCATCTTTCCAAACGCTTATGCATTCAGAAAGCACTCTGATTTCACTTAAGTGCCAGGGATTTTATAATTCCAATGTCACCATCTAAAAGCTGTTTTGTTGACCATCCTTGGCACTAGACAGCTGTCTCACTGCCTGCTGTCCTATCAATAAGTGAAAGGCATCATCAACACAGGGCAGGTGCATTGCTGTAGTCTATGCTAACAGATTTTTTTAAACCCCTGTCTCTTAGGtgaatttttttcttcttctagaTGCTCTGAATGTATAAGTtgtaaaccttttttttttattcagtcCTTAACAGTCCCACTTGAAATGCTTCCAGAAACCAATGAGGGATTATGCTGAAAtacaggtaactgtcaaaataaaggaaaacacCAACATGTATTGTCTTTAagagggtgttgggccaccacagCTTTAATGTACAAGTGTCTGGAAGtcttggagggatgcgacaccattcttccatgagaaattccagatttttttttttgttttcctccaggatctcccataagtgtttaaTTGAGTTGAGATCTGGTTACTGAGATGGCTATGGCATATGGCTTACATCGTTTTTATGCTCAAAatattcagtgaccactcgtgccctgtggatggggttattgtcatcctatgggggcgtAGCCAAAATAATACATCACCCTAAGTAAGCATGATGGGCTGTTAcctgcttaattaactcaggaagtGCACCTGTGGAAgcatctgctttcaatatactttgtttccctcatttactcaagtgtttccattattttggcagttacctgcacTTTTATACTATCACCGATTTAATAATCTAAAGCATAAGAATATCACCCTCGTGTATGAGCAGTACTCTTGCAGTAATTGTTATTTGAGGTGAAGGGGCTCCATATATGGATGTAGGGTTTAGTTTGAAGGTTTAAGCTCTGAACTTGTTTACTGCACACAGCCTAAGAGATTTGGTTCATTGTATTTGGGCCTAGCTAAGGCTCCAAACTGCACAAATGAGTGTTGCTCATTGCTTTGAAAGATGTTTTAGATGCATTTGTGATTGATTTTATTACATAGTCTATTGAGTGGACTAGAATGTACATCTCACTATCTGTAACTTAGAGGTAAAAGTCATATGTGTAGGATCGACATCTTTTATAAGGCCTTATAAGCACAGGGACACAGGCATTTGTTACAACTAATATGCAGAACTATTTTGTTGATATAGCAAACATCTGTATTTTAGCATGGGTGTCTAAGCATATTTCCTCTTGTAATCAAATTGTTCTGTTCTACTAAACAGGAATCTACCATAGTGCCTTCTATTTTATGCATCATACTGACACATGGCGGTCACCTCTGTTCTCATAGATCAATTGCTCATGGCAGTGTGTCTATTCTGTTGGGGCTTGCTGGTCTAACGCATATCGATAATATTCTGCCCCTACCAAGCTTAAGTCGGTCAATTTGTATGTTTGTGGTTTAGGCGCTGGGAGAGTTAAGAGAGGGTATCACATCATGCATCATTAACCTGTTATCTTGttggttctgtatttatttatttattggtgGAGGTCAGTAGGTTTTTACTTGCCTTTTTAGAAGCACACAGACAGGAATCATTCTCCTGATATTTGTATTTCATTTCTTGAGACTTAAGCTTTTTCTGtactttatatctctctctatatatataaaatttGAGATGTTAAAGTTCCCAGCAGAACTGGACAGGGATTACAGTGGAACCAACTACATGCATCAACTTTAAAACATAACTACACTTAATGTTATGCTTTAATCGTGTTCCAAAAGGTTAACTGTAATATATAAGCACTGCTATTCCCCATGTTGATACAAAACCATGAAACGTGATACAGCAATTGTAATACCTTGCTGCCTATTTTCCATTAGCCTACTTCTAGTTGCAGTATTCTGGGTGTGCCTTCCAGTGCTTCACTATTTTCATCAAAGAAAGGGAGTGGAGTGAATAAAGAGAGGGGGTCTTATGTTTGCAGTGTTCAGAGAATGTGAAGTAGGTGCTAAAAAGATTGGAGGAGAAAGGGATTGATTGGTTTGTTCTATAAACAGGGAATGAAAAGGGAGCAGACATTGAGGCAACATTGGTATTGTTTGTTCTATAAAGCATTACGTGAGTGAATGGTTGTCTTTGTGATCATTCAATAACAATGTTCCTGTATAAACTGTCCCTTGTGGGGCCTCTCCCTTGAAAGAGCCACCTGGCCCTCTCCCCACTAGGTCAATTGCAGAGAAGAAGTAGCTTGACACTAACCTGTTATGAAAACTGTACAGCACTGTCCAAACACAGGAACCGTAAGACTCTTGCCCTCTATACCCAAATGACACTTGCCTGTTTCACTGCGTTTCCTATGAAATTAAAGATGGCATTTTGTTACACCAGAGTTTAGGGGAACAATGTTGGGGTACAGGGAGGATTTGAACACAGTTCTGAATGGTTATACATTTCATGTGGGCATTTTTATGGGTGCTGATTGGTTTGATGGTAAGTAGAGAGATTTGATTTTCTGTTGTAACTGGCACGGGGCCTATTTTTCAAGCTTCCATTTGTCTTGGTCTGTTTAGTTATGATCTGCCTGTTTAAATATTTGAAATAATACTCTCCAGTGGGAGGTTTCCATTCGTTTAACTGTATTTTTATAGTTTTCAAATGATAAATACTAAATAGACACAAGTTGTTGTACTATAATGACTATGTACTTTAAAAATGGATCATTATTCTTGGTTAATATGTCCTCTGGTGAACTGCTGTATTTTAATGTG

Function

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27485 lncRNA downstream 118867 23915118 ~ 23915358 (-) True G23839
TU27484 lncRNA downstream 121118 23912882 ~ 23913107 (-) True G23838
TU27479 lncRNA downstream 124988 23908912 ~ 23909237 (-) True G23833
TU27478 lncRNA downstream 125664 23908257 ~ 23908561 (-) True G23832
TU27477 lncRNA downstream 127109 23906897 ~ 23907116 (-) True G23831
TU27582 lncRNA upstream 25968 24075401 ~ 24075685 (-) True G23932
TU27590 lncRNA upstream 32659 24082092 ~ 24082376 (-) True G23940
TU28250 lncRNA upstream 42611 24092044 ~ 24092499 (-) True LOC118948024
TU28254 lncRNA upstream 47143 24096576 ~ 24096892 (-) True G24514
TU28255 lncRNA upstream 54115 24103548 ~ 24104450 (-) True G24515
XM_021592581.2 mRNA downstream 18448 23981215 ~ 24015777 (-) True LOC110511826
XM_021592530.2 mRNA downstream 88282 23941895 ~ 23945943 (-) True LOC110511707
XM_036972417.1 mRNA downstream 173196 23821656 ~ 23861029 (-) False LOC110511130
XM_036972413.1 mRNA downstream 173197 23821656 ~ 23861028 (-) False LOC110511130
XM_021592107.2 mRNA downstream 259360 23769293 ~ 23774865 (-) True LOC110510928
XM_021592634.2 mRNA upstream 876 24050309 ~ 24072410 (-) True uba2
XM_036973051.1 mRNA upstream 42171 24091604 ~ 24102924 (-) False LOC118948024
XM_021593038.2 mRNA upstream 69791 24119224 ~ 24126628 (-) True ccdc113
XM_021593323.2 mRNA upstream 183783 24233216 ~ 24288176 (-) True LOC110513500
XM_021593400.2 mRNA upstream 248265 24297698 ~ 24343156 (-) True LOC110513605
TU27396 other downstream 207734 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 409876 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1190920 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1652017 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2486452 21535933 ~ 21547773 (-) True LOC110507736
TU28304 other upstream 173474 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 503158 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 814654 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 878915 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 895475 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile