RNA id: XM_036973051.1


Basic Information

Item Value
RNA id XM_036973051.1
length 1554
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC118948024
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24091604 ~ 24102924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggccgaatactttcgcaaggcactgtatataatctatatatacttgtgttccctcaaaaaaaaaaacatttttttaaatgttcccaTTTCTTATTTTTATGACATAAATCAAGAAAGTTTATTTATGAATTTGTAATTGAAAGCTTTACATATTAGAATGTTAGTCAGTTACAGTAACAGCTCTGAAGAGGAAATAGAAAATGTGCTATTAGAGGATGTAACAAAAAGGCTACGATACTGGCACAGAGATGACAACTCATTAAGGAAGAAGCACAAATCAGAGGAACACACCACCAAAACAAGGGAGGAAGATGACTTCAAGTCCAGACTGCCTCTTCCTGGCAGTGTGCTGGACATGTTTACAGAGGAAGATGATGACCCACAGACTGGACAACATACAACATGGTGGACGGATTCACTCTTTCAaacatgagaggagaggggaaactgGGCCACTTAAGTGTACTTTCCACACATCCCAGAGGAAGGGTTCTTGGAGCTGCTTGATGAGATGACTAAAGTAGCAGGATCCCATGACATCTCCCTCACTCATACAGACGAGTTTCACCTCAGTCTAAGACAGTGGTTCTGAGGCATCATTGGATCCAGCCTTTCATACAGTCCCTCAGAACAGGCTTGGCACATGGCAGGAGGTCTGCTATGGTTCATTTCTTTGGCTGAGAAGCTGAAGGTCTACTCCAATGATGATAAAACCAGGACATTACTGGCTATGGAAGTTTCCACAGGACAGGCTCAGCTACTAGAGCTTATGAAAGCAGTGGATGGCACCATGGAGGAGTTCACCCTTGTCACTTTTTACAAGAATCCTTCCTTCCATGTAAGTCTGACCTGGTGTGTTGAAGAGTGTCTGCAGGAGTTGCAGGGTTTGGTTGACTCCCATGAGGATGGAGCCTTCCTGTTGAGACTGGACTGTCAAGAGTTGCAGCGTTAGTTTGGGAACAAGACCTTTTCCTTTCCGCTACACTGACAACCAGTTCTCATTCATTCTGTGGTCAACTGTAATGTTGTGAAACCTGACAAATGTTCATAATTGACCTACAGAATGAAACAGTAGTTGTCAACTAAAGCTTTTGTTAGATTAAGCCTTACAGGCCTAAATCCATTTTTAAAGTGTGACTTGTGAACTAGAAGGATATAATTCATTAATGAACCTTTTTGATTAAAGAGGATATAATAATCCTGAACTAACACTCCAGACGACAGGACCCAATGACTTATGGCACAATCACTCGTGGCTTTCTGATGAGTTCAGAAACCCTGATTACGTGTTGCAGGTGCATATGGTAGGTCCTGTTTGATCCGTGAAAGTACTGAAGTAGATGTGTTAAGACATCTGAGGGGAAGAGGTAGTCTCTTTCGCCAGACAATGGGCGCGCTGCACGCACGCTCCACGGCAGCTGTGAGAAGAGACTAGGGAAGAGGAACCTCTGAGGCTGATGAAACAGAGTTCCAATTTTCACTCCCTCTTACTTTAACAGAGCTCCCACAGAAGGCATTTTACTTAATGGGCAGTACACAAACAGGGCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27590 lncRNA downstream 9228 24082092 ~ 24082376 (-) True G23940
TU27582 lncRNA downstream 15919 24075401 ~ 24075685 (-) True G23932
TU27485 lncRNA downstream 176246 23915118 ~ 23915358 (-) True G23839
TU27484 lncRNA downstream 178497 23912882 ~ 23913107 (-) True G23838
TU27479 lncRNA downstream 182367 23908912 ~ 23909237 (-) True G23833
TU28255 lncRNA upstream 624 24103548 ~ 24104450 (-) True G24515
TU28242 lncRNA upstream 8120 24111044 ~ 24112648 (-) True G24504
TU28246 lncRNA upstream 13875 24116799 ~ 24117790 (-) True G24507
TU28316 lncRNA upstream 67409 24170333 ~ 24178502 (-) True G24550
TU28300 lncRNA upstream 125115 24228039 ~ 24231869 (-) False G24541
XM_021592634.2 mRNA downstream 19194 24050309 ~ 24072410 (-) True uba2
XM_021592683.2 mRNA downstream 42171 24034225 ~ 24049433 (-) True LOC110512077
XM_036972886.1 mRNA downstream 42174 24034225 ~ 24049430 (-) False LOC110512077
XM_021592720.2 mRNA downstream 44103 24034225 ~ 24047501 (-) False LOC110512077
XM_021592581.2 mRNA downstream 75827 23981215 ~ 24015777 (-) True LOC110511826
XM_021593038.2 mRNA upstream 16300 24119224 ~ 24126628 (-) True ccdc113
XM_021593323.2 mRNA upstream 130292 24233216 ~ 24288176 (-) True LOC110513500
XM_021593400.2 mRNA upstream 194774 24297698 ~ 24343156 (-) True LOC110513605
XM_021593578.2 mRNA upstream 305121 24408045 ~ 24410610 (-) True LOC110513914
XM_021594017.2 mRNA upstream 449468 24552392 ~ 24554074 (-) False LOC110514811
TU27396 other downstream 265113 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 467255 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1248299 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1709396 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2543831 21535933 ~ 21547773 (-) True LOC110507736
TU28304 other upstream 119983 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 449667 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 761163 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 825424 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 841984 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile