RNA id: XM_021593323.2


Basic Information

Item Value
RNA id XM_021593323.2
length 4063
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110513500
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24233216 ~ 24288176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGAATGCTTTGACGTCAGTAGCAGGCCAACCCAGGCCAGCGCTCAGAGCGGATCAGACGGAGGTGAATGCACGAATAGGCTAGCCTACTGCAGAGAGACGCACTCACATCGAGCATCCCTGTTGCCTCGTCATTTGCGGAGACATCGGGGCACGCAAACACTACACACCTGGCACAGTCAATACAACAGGGCGAGGGGAAAATATTGTGTAATAGCGTTATTAAGATTTTAACACATCAAGTAGGCTAGTATTCTTGGTATAGAAAGAAGTGCATTGCTGTTTACAGTGGTGGGTCGCTCCACTAGCCTCAAGGATAACGCATTCTCCTAACAATGGTAATGCATCAGTAGAGAGAGCCTCCAGCccaaccctccctctcttcatacCGAGACCCCTCATCCAGACTGAGACTGTCTCCAGCACCAACACACCACTCCCCTCACCCCGCCCTTGCCCCGCCCCACCCAGACATGGCTGCTTCTAAGGGTGGCTACGAGGGCAAGATCGCCGGCCTCTACGACCTGGATCGCACGCTGGGGAAAGGCCACTTCGCCGTGGTCAAGCTGGCCCGCCATGTCTTCACAGGCCAGCTGGTGGCGGTCAAGGTGATTGACAAGACCAAGTTGGACACCATGGCAACGGGCCACCTGCTGCAGGAGGTGCGCTGTATGAAGCTGGTGCAGCACCCCAACGTGGTGCGGCTCTATGAGGTCATCGACACCGCCACCAAGCTCTACCTCATCCTGGAGCTGGGCGATGGAGGGGACATGTATGACTATATCCTGCGCCACGAGGGTGGAGTGGCCGAGGACACGGCTAAAGTTCACTTCGCCCAGATCGTCCAGTCCATCTCCTACTGCCACCGGCTCCATGTGGTGCACCGAGACCTCAAGCCAGAGAATGTGGTGTTCTTCAGGCAGCAGGGTACAGTCAAGCTGACCGACTTCGGCTTCAGCAACCTCTTCAAGCCCGGGACCATGCTGATGACCAGCTGTGGTTCGCTGGCTTACTCCGCCCCAGAGATCCTGCTGGGGGATGAGTATGACGCTCCGGCTGTAGATATTTGGTCACTGGGGGTGATCCTCTTCATGCTGGTGTGTGGACAGCCGCCATTCCAGGAGACCAATGACAGTGAGACGCTCACCATGATTATGGACTGTCGCTACACCGTCCCCGCCCATGTCTCCGCAGACTGTAAAGAttTGATCTCCCGTATGCTGCAGAGGGACCCGTCTAGCCGTGCCTCCCTGGAGGAGATCGAGAACCACCCCTGGCTGCAGGGGGTCAACCCCTCCCCCACAGGGCACAGTGCCGCCCCCCTCACCTCCCACCGCAGCCTGTCCCAGGAGGAACACGAGATCATCCTCCACGCCATGACCAGCGGCAACATCGCTGACCGCGATGCCATCCAACAGGCTCTAGAAGCGGATCAATACAACCACATCACAGCCACGTATTACCTGCTGGGGGAGCGCATCCTGAGAGACAAGCAGGAGCAGCCCAGCGAGATCCCGAAAGTTGACAGTTCGTGGGCCGAGCCATCACAACTCCAGAGGCCGCGGTCTGAGCCTCTGGATCTGGAGCAGAGGGGGCTCCATGGCCTGCTGGCTGGCTGTCCCCGCCGAGGGGTGTCTGATGCTGTGGACTTCCTGACCCACAGGCCCCTGCTGCTTCAGCCACAGCCAAGTCGCACAGAGAGCCCCTTCCCTGAGTACAGCACAGAGCCCTGCCTGGGGCTCACCCTGCACCCTTCACCTCCTGACGAACCTCCACAGATCAAGAGCCTGGGAGCCCTGCAGCTTATctgtgaagaggaagaggaggaggaagatgaggcgGAAGAGACAGGCAAACCACATGTTGGATTTCATAATATTCAAACACTGCCTCATATAATAGGCTTGGTATCAACCTCTGTGTCTACAGAACAGTCTAGTCCCATGCTCACAGCTCCAGAGGCTTCACAGAGCCCAGTCAGAGTAGTCCCAGGTCAGGGAGAGGAAACAGGCCTGTTGGCCACCTCAGTGGAGGAGGcactggagacagagaggggggagtgggacAGGGAGCTGCAGGCCAGGGTTTCTAGCCACAGCAGAGAGATGGAGCCTGACCAGCTGGCAGCCATACAGGAACAAGAACAGGGTATGATGGAGTCAGGGGAGAAGCCCATGGAGGAAGGAGACATGTCATGTGACCAACTGAGGCTAGGTAGTCATTTGACTTCAGACCAGCCAATCAATGGTAGTTCGATCAGCCCTAAAGCTCAACCTCCATACCTGCCTCGCCTCGGGGGGGTGCAGTGTTGTTGTGGGCAACAGGAAACTCCCAGCCCAGACATCATAGAAGGGGAAGATGCTATTcttaaaaacaacaacaccacagAGTCCAAGCCTAAGCTCCTGGTGCAGGGTGGGGGGTCCACCCCAGGCGCCTCACCCCGCTCTCTGCCCCATAACCACTGTGTGGACCTGGGCCCCGACGGGGTGGAGATGACCCGCAAGGTGAGAGGGCTTGGTGGGGAGTCTGAAGGGGACACTCCGGAGGAGCTTCAATTAGAGAGATCCCACAATGCACCACAGGGTCGCCTTGGGCCCAGGGAGACGGGGACCGACCCTACGTTCAGACTGGATCCTGGAAAGGGGAAGAACGTGAACCTGAGAGACCGCCTGCTGCAGTTCCCTCTCTgtgagaaggccctttccttcaACATCCAGCCCACCTCCAAGGAGAAACTCCTACCCTTCGCCCAGTACAACTGCTGCCATGTACTGTAGGCAGGGCCACCTGTAGATACCCTATACCTCCCACATTACTCACTCTGTCCCCTAGCCAAGGGGTAGGAATGGGCATCACTCCAGACACCCTCACACCAGGCCCAGACCCTGTCACTGTTCCATCTACTTCAACTTCAACACAAAACACTGGTGCAGACAGTATGTAGCCTATCTGAACTATCGGTCTGCGTCCAACCTAAACGGAATTATCATACTGTGACCTCAGACACGTTCCAGCCAATTGTAGTTAGACCTGTGTGGCCCCCACCCTGACCTCTTCATACTTAACGTCTACTGCTGCTTTCTTTGTGAGACAAAAACTGGACCTCATTGTGCTGCTATGTACGGGACTATAGAAAATGCTTTTTGTGTGGTCTTCTTAGActatcactatatactgtagcttTGAATTGATTGCTATTTTATTTGCCCTTGTATCATAGCTTTTCATTTTGTACTAGCCTATCTAGAACTGAGCCCATTTTAGCATATGGTATGTTGTCACTCTGAGGCCTGCTAGTACAGTGCTATAATTGGAATGTGTAAGATGATGCATGCTGTATAGGTGAAAGCTACACTCCATGCCTCAGGCGCCATCCTTCGTTAGCTCAGCTAGCGGCATGATGGAAGGTGTGATGATGCTCTAGACAGTGTAGCTGGAAGCATGGTATAATTTAATGCGCGGGGTTACTTACGTCAATGACATTGTTGGTGCACTAATGTGGGTGCATTGTTGAATCTCAGTGGTACACAGTAGTGCAGAGGAGATGTGTCGGGCAGCGTTGCTCATGGTCACGTGATGAAGTAGCCCCGCTTGCGAACTTCAAAACCAGTGTCTGACCTTGGACCATGGGGGAATTTCCTCTTGGTCTACTGGCCTGGTTGCTCCCTAGGGAGACCCGCGATGATATCCTGTATGTTACATTGGCGACCAACGTGAGGCGATCTCTCGTGGgggaggaggtcaaagggggGTGAATGTAGTGGACTTGTCGGACTTGGTTGCTCATGGTCACGTGATCAGGGTCTGCGTTGGGAGCCGTGGGAGACCATGGTTCATATCACGTGTGTTACAGTAGCAAGGCTTGGGATCTAAACTGAATGTAAGAGCAACACCCAGGGAGAGAAACATTTTTGGACAGAGTTTCATAATGGagacttaaaaatatatactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28300 lncRNA downstream 1347 24228039 ~ 24231869 (-) False G24541
TU28293 lncRNA downstream 1347 24228113 ~ 24231869 (-) False G24541
TU28299 lncRNA downstream 1347 24228113 ~ 24231869 (-) False G24541
TU28301 lncRNA downstream 1347 24228113 ~ 24231869 (-) True G24541
TU28316 lncRNA downstream 54714 24170333 ~ 24178502 (-) True G24550
TU28395 lncRNA upstream 20423 24308599 ~ 24308889 (-) True G24621
TU28449 lncRNA upstream 126926 24415102 ~ 24415964 (-) True G24670
TU28451 lncRNA upstream 128777 24416953 ~ 24417509 (-) True G24672
TU28454 lncRNA upstream 138147 24426323 ~ 24426650 (-) True G24675
TU28458 lncRNA upstream 152646 24440822 ~ 24441043 (-) True G24679
XM_021593038.2 mRNA downstream 106588 24119224 ~ 24126628 (-) True ccdc113
XM_036973051.1 mRNA downstream 130292 24091604 ~ 24102924 (-) False LOC118948024
XM_021592634.2 mRNA downstream 160806 24050309 ~ 24072410 (-) True uba2
XM_021592683.2 mRNA downstream 183783 24034225 ~ 24049433 (-) True LOC110512077
XM_036972886.1 mRNA downstream 183786 24034225 ~ 24049430 (-) False LOC110512077
XM_021593400.2 mRNA upstream 9522 24297698 ~ 24343156 (-) True LOC110513605
XM_021593578.2 mRNA upstream 119869 24408045 ~ 24410610 (-) True LOC110513914
XM_021594017.2 mRNA upstream 264216 24552392 ~ 24554074 (-) False LOC110514811
NM_001165110.1 mRNA upstream 307909 24596085 ~ 24602378 (-) False ciapin1
XM_036946489.1 mRNA upstream 307911 24596087 ~ 24602486 (-) False ciapin1
TU28304 other downstream 6726 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 406725 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 608867 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1389911 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1851008 22381870 ~ 22382208 (-) True G21993
TU28501 other upstream 264415 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 575911 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 640172 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 656732 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 992416 25280592 ~ 25281030 (-) True G25115

Expression Profile