RNA id: XM_021594017.2


Basic Information

Item Value
RNA id XM_021594017.2
length 1295
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110514811
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24552392 ~ 24554074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgcactgtacatctcaATATTGTTTGTTATTAAGGCTTGTGGTGATCATAATTGTATAGTCATTTTTGACCTATTACAACTAAATAATGGAAGAGGACAACAGAACGTTCAGCTTCTTCGAAGACTGTTAAATGAATGTTGGTTGATGAATGCATAGCTTCAAATGGCTGATACAGTGTGACCCATTACGGCTTCATCCACTTTTTGTGATGATTTGTCATTCGCTTTCCGGTGACAAAGTTTGCTAGAGATAATTTGCAAGAACTGTGGTGGCACTGCATTTAATCTTATCTTCATCGCCTCATGTTTACGGTCCCGACTCTCAAAAAGGAAGTGACAAGGAAGTAGAATATAAAGATGATAGATATGGTAGTGGTTGGCAGGCTATGGGGGTGTATGGAAATTGGACATCATAATGTCATTCTCTTCTAGGAAATATTAATATAACTCTGGAAGTTCCATCATACATCTTGACAGTATTTATATGAGGAGATGCAACCCTTATGGACTCAGACTACAGAGGAACCAAAACAAAGACAGGTCAAACGCCAGACTTTCGACATCTCAAATCATCATGAAGACTACCTGCTTGGCTCTTGGGTTATTGCTGCTGACAGTATCCCAGTCCTATGCTATCCCTCTTGGACTGGAGTCATCACCTGACAGCTGCTGTTTCAGCTTCTCCAAAATGAGAGTGCCCCCCAAGAAGATCGACTCCATCCAGAAGACTCACAGTGGATGCCCCCGACCAGCATTTGTGGTCAGAACTGTTGAGGGCAGAGTGATTTGCTTCCAGTCAAGTGTGCCGTGGGTACAGAAAGCCTTCAACCGGGTCAAGCAGACAGCAGCTGTGGCCACAAGTAGCGGCATTGAGGGTTCCAGTCAACCTTGATAACCTCCTCATCATGACTCAAGCCTCACAAGACTATATTGTCATCAACATGCAAGCAATGCATTCTAAGTGACATGTTTATCACTTAGAATGCAGCAATTACTATTTTGCGACATATGGAATTGGGGAAGGAGTGTTAGGATGTACACACCTTTTTGTTTATGTGAATACTGTGAGAATCCACTGCTTAAATAAAATGAGAACATTTGACTTAAACATAAGTCTCATCTTtaatataataatgtacagtTAGATAGAGAACAGATGATAAAAGGAAGAACCAAATAAAGCTGAAAACAGTGtacatataaaaaaaacaatacaaaaaactCCTAAAGTTAGGACTACCTTTTAAGGGGTTTCTAGGATAAGGGATTGGTTAAAGTACTATTTAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28548 lncRNA downstream 14009 24538116 ~ 24538383 (-) True G24762
TU28547 lncRNA downstream 15565 24536627 ~ 24536827 (-) True G24761
TU28545 lncRNA downstream 17330 24534731 ~ 24535062 (-) True G24759
TU28544 lncRNA downstream 18123 24533892 ~ 24534269 (-) True G24758
TU28543 lncRNA downstream 18781 24533342 ~ 24533611 (-) True G24757
TU28557 lncRNA upstream 10932 24565006 ~ 24565215 (-) True G24771
TU28561 lncRNA upstream 16527 24570601 ~ 24571150 (-) True G24775
TU28571 lncRNA upstream 29421 24583495 ~ 24583814 (-) True G24782
TU28503 lncRNA upstream 112550 24666624 ~ 24667504 (-) True G24718
TU28637 lncRNA upstream 170199 24724273 ~ 24724537 (-) True G24842
XM_021593578.2 mRNA downstream 141782 24408045 ~ 24410610 (-) True LOC110513914
XM_021593400.2 mRNA downstream 209236 24297698 ~ 24343156 (-) True LOC110513605
XM_021593323.2 mRNA downstream 264216 24233216 ~ 24288176 (-) True LOC110513500
XM_021593038.2 mRNA downstream 425764 24119224 ~ 24126628 (-) True ccdc113
XM_036973051.1 mRNA downstream 449468 24091604 ~ 24102924 (-) False LOC118948024
NM_001165110.1 mRNA upstream 42011 24596085 ~ 24602378 (-) False ciapin1
XM_036946489.1 mRNA upstream 42013 24596087 ~ 24602486 (-) False ciapin1
XM_021558348.2 mRNA upstream 42013 24596087 ~ 24611486 (-) False ciapin1
XM_021559670.2 mRNA upstream 42013 24596087 ~ 24611535 (-) True ciapin1
NM_001165109.1 mRNA upstream 143613 24697687 ~ 24711462 (-) True gbrl2
TU28304 other downstream 325902 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 725901 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 928043 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1709087 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 2170184 22381870 ~ 22382208 (-) True G21993
TU28721 other upstream 310013 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 374274 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 390834 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 726518 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 727530 25281604 ~ 25282018 (-) True G25117

Expression Profile