RNA id: XM_021558348.2


Basic Information

Item Value
RNA id XM_021558348.2
length 1373
RNA type mRNA
GC content 0.47
exon number 9
gene id ciapin1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24596085 ~ 24611535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAATTGCGGTTTGCAATTACACCATATTGCAAATTTCGAGCAGCTGAAGGAAACATCTCACATACAACCGGAGGACATGGCAGACCTTGGTGTGAAAGCAGGAGATAAGGTGCTTTTGGTGTGGAGCCAGCCTTCGTCCCCaacaaccctgaaggagctggcaGAGAGTCTAGGGGCCATGGTTGGCACCGATGGCCGAGTGTCCCTGGAGAATATGGAAAGACTTATGATGTcTTCACATGCAGCATCAAGCTACGACTGGGTCCTCTCAAGTGTACTCTCTGACAGCTTTTCTGTCCACACCTCAGAGACACTAGCAGAGATGGCCAGAGTGATCAAACCTGACGGAAAACTAGTGCTTGAAGAACCTGTTACAGGAACTGATGACCAAAAAGTGAGGACTGCTGAGAAGCTTATATCAGCCTTGAAGTTGTCTGGCCTGGTGTCAGTGACTGAGGTCAGTAAAGAACCTCTGACCCCAGAGGCTGTGTCTGCCCTGAAGACatacacaggcttccagggtaaCACTCTATCCAGGGTGCGCATGTCTGCTTCTAAACCCAACTTTGAAGTGGGCTCTTCAAGCCAGCTGAAGCTTTCCTTTGGGAAAAAGACCTCAAAACCAGTAGACAAACCTGTACTTGACCCCAATGCTGCCAGGGCGTGGACCCTGTCAGCCAATGAcatggatgatgatgatgtgGACCTGGTAGATTCAGATGCGCTGTTGGATGCAGATGACTTTAAGAAGCCAGACGCATCCTCCCTCAAAGCGCCCTCCTGTGGTGACGGAACCACCAAGAAAAAGAAGGCTTGCAAGAACTGCTCATGTGGTCTTGCTGAGGAGTTGGAACAGGAGAGCAAGGGTGCCAAGACAATCAGCCAGCCCAAGTCCGCCTGTGGAAGTTGTTACCTGGGCGATGCCTTCCGATGTGCCAGCTGTCCGTACATTGGGATGCCTGCCTTCAAACCTGGGGAGAAGATTGTACTAGCCAACACAGGGCTAAATGATGCCTAGGAACAACCACAATATATACTTTCTGGAATATCACATTCCTTACATCATTCTAACCTCCCACCCCCTGGAGTCAATGACCAATGCCAGGTTCTCACTGAGATGGTCAGAATGGCTCTTCTACATCTCATGTTTGAAGTAAATGTATTTGGAGTAGCGAAACAATCCAGGTTACAGGCTTATTTGACCATGTAAAAACTGTTCCTGGACATACAATGAAGATTTCACAGGGCACTCACCATATTAACATACAGGTGTCCATAAAATGTCAGTTCAATTAAGTGTGTATATTACTATCTGTATTGTTTTCTATTAAAATAAGTCTTATTAAATGGGAAATCCTGAAAATAGACTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28571 lncRNA downstream 12273 24583495 ~ 24583814 (-) True G24782
TU28561 lncRNA downstream 24937 24570601 ~ 24571150 (-) True G24775
TU28557 lncRNA downstream 30872 24565006 ~ 24565215 (-) True G24771
TU28548 lncRNA downstream 57704 24538116 ~ 24538383 (-) True G24762
TU28547 lncRNA downstream 59260 24536627 ~ 24536827 (-) True G24761
TU28503 lncRNA upstream 55138 24666624 ~ 24667504 (-) True G24718
TU28637 lncRNA upstream 112787 24724273 ~ 24724537 (-) True G24842
TU28642 lncRNA upstream 117065 24728551 ~ 24728782 (-) True G24844
TU28676 lncRNA upstream 160430 24771916 ~ 24775300 (-) True G24871
TU28687 lncRNA upstream 183001 24794487 ~ 24796348 (-) True G24882
XM_021594017.2 mRNA downstream 42013 24552392 ~ 24554074 (-) False LOC110514811
XM_021593578.2 mRNA downstream 185477 24408045 ~ 24410610 (-) True LOC110513914
XM_021593400.2 mRNA downstream 252931 24297698 ~ 24343156 (-) True LOC110513605
XM_021593323.2 mRNA downstream 307911 24233216 ~ 24288176 (-) True LOC110513500
XM_021593038.2 mRNA downstream 469459 24119224 ~ 24126628 (-) True ccdc113
NM_001165109.1 mRNA upstream 86201 24697687 ~ 24711462 (-) True gbrl2
XM_021595131.2 mRNA upstream 197086 24808572 ~ 24819239 (-) False cdk10
XR_002472482.2 mRNA upstream 197086 24808572 ~ 24819243 (-) True cdk10
XM_021595392.2 mRNA upstream 242338 24853824 ~ 24865158 (-) False znf276
XM_021595703.2 mRNA upstream 287425 24898911 ~ 24905644 (-) True LOC110517792
TU28501 other downstream 42525 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 369597 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 769596 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 971738 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1752782 22839845 ~ 22843305 (-) True G22350
TU28721 other upstream 252601 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 316862 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 333422 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 669106 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 670118 25281604 ~ 25282018 (-) True G25117

Expression Profile