RNA id: XM_021595392.2


Basic Information

Item Value
RNA id XM_021595392.2
length 2862
RNA type mRNA
GC content 0.48
exon number 11
gene id znf276
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24853824 ~ 24865158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaaatatctgtcttaTTGTTCTATCtgcgttattattattatttttgactACTTCCGGGTTTCAATAGAAACCGCTTCCTGTTCGTGCTTTACGATAGTCGATTTAACAGTAACACAATATGTATATTTTACTAAACCACCAACCAACTAAATGTTAAAACTACAAATGACTGCTAGAATTTGAGGCGAATTGTGTTCTCCTCATTGGAAGTCGCAGCTGCAGGTTTCAAATCAACTTTGGGTTTTAAACAGCTATACTGATAACAGCGCTCCCCATGTAAGACTCAAGTTACTTTGAAAGCTACTGCCACATTATATTGACAGGACTTGTCTTAAGGACTCTGTGTAATGAAGAAGCGAGGGAGACGAGCGCGGCTAACCGATGTGGCAGCAGGACAGAGAAGCCAGACCCAGTCAGTGGCTGGGGTCAAGAAACCTGCTGGGCGACGAGAAAGACCAAAGAATGCTGTGAAAACAACTCCACCATCAGTTGCATGTGATGGAGGTTTCGAGGATGTTGGTCCAAGTGACAGATCTGCAAGATTACAATTGAGCACAACCGTGTCAGTTGTGGAGATAGAAGGGGAGGAGCATCCAGAGAATAGATCAAAGAAATCAGGTATGGCCAGACTCAGCACTGCATTCTGTCGACTCTGTCATGGAAAGTTCTCACCTCGGAGGCTGCGGCATGCCTTTGACAAGTGGCCAGGAGAGCTGGCGGGGGTCCCTGACCAGACAGAGCCAGCCCAGTCGCCCCTGCTTTTCTACACAGACTTTCAGCGCCTAGTGGGAGTGCCACTGAACCGTGACCCACGTCTCTCACAATTTGTCTGCAAGAACTGCCACACAAAATTCTACAAGTGCCACACTATCCTGCTCACATTTCTGCAGAGGGTAAACCTCTTGCCATCTGTGAATGTGCCCACCAGAGACAGGAAAAGTTCAGAGTGCTCTCAATCAACAGTGCGTCCCAGCTTGTTGTCCATCCCAACCATCCCCTCCGATCCCAAGTGTCTCCACAGCCTGGTGTCCTGGGCCCACCACCATGCAGGAGACTGCCGCTCCTGCCCTGACCTGAAAGAAGTGCTGGAGGGGCAGTGCTGGGGCTCAGTAAGGGCTGTCTGGGAGTGTGTGGCTGGACATAGTTACATGATGGACACACAGACCAGAGCAAATCCTGGACACACTGGGTGTGATCCCCTACTGGAAGCTGAGGAGCAGCCCAGAGGGAACCGAAACCCTGTCAACACCACCATGCCCCTGGCCAGTCCAGGTGCTACCCCACAGACTCCGAGTTCCATCAACACTGATGCTACTACCACTAGTGTAGATGAATTTCTCTTTGCTAAGGCGACACCCTGCCCTGCACCTGCCCCACTCGTGGACAGGACAGGTGATATTGACCTATATGACCGGAACATGTCCAGTGAGGATGAGTTGGAAGATAAAAGGAAAAGTGGATCCTCTGATGAATTATTTGAACCATACCCAGAAAAGAAAGTTGCCTCCCCGAAGAAGAGAACCAGAAGAAAAGAAGCAAAAACTCCCAAGGAGCCTAAAGTCAGAAAGAAGCCAGGACCCAAGCCTGGCTGGAAGAAGCCAATCAAGTCAGAAAGAGAGGAGCTGCCCAATATCTACAAATGTCCATACCAAGGCTGCTCAGCTGTGTACCGAGGAGCAGACGGCATGAAGAAACACATTAAGGAACACCATGAAGAGATCCGTGAGCGACCCTGCCCTCACCCTGGCTGCAACAAGGTCTTCATGATTGACCGCTACCTGCAGCGACACGTGAAACTAATCCACACAGAGGTGAGGAACTACATCTGTGACCAGTGTGGTCAGACCTTCAAGCAGAGGAAGCACCTGTCTGTGCACCAGATGCGCCACTCAGGGGTCAAGCCACTACAGTGCGAAGTGTGTGGTTTCCAGTGCCGCCAGAGAGCATCGCTAAAGTACCACATGACTAAACACAAGGCAGAAGCTGATCTGGAATTTGCATGCAAACTGTGTGGAAAGCGCTTTGAGAAGGCCCACAACCTCAACGTCCACATGTCCATGGTGCATCCCCTCACACTAGCAGCTGCTGGAGGAAACATCGACAGCCCCTCCAACCCTGCTATCACCAACATAGAGACCATCACAGAGACTGGGGCACTGAACCCTTACAGCAGTTGACCGACCTGATTAGGCCTGTGACCCTCAAGGAGATATAACAACCAGAAAGTCTAACAGGGCTAGGgaactagattcagctgcgggacgATTTCTGTCAGAGAGCCAGTACATAATTATAACTTTGTACAACTGCAAATGGACCACAACTAAGGCAAAAAAATCACTTGCGGGATGTTTAGGCCTGCCAGCCGCCTGTTGCTGACCCCTGGTCTATAAGGAGTCTGGTGTAAAATGGTCATGGCTAATGTGACTAATTAACTTGAGGTAGAGAATAAGGTTAATAAGTTATACATGCACTATGTATAGATGACAGTACGTCTAAAATGAGCACAGCTAGCGGATCCTCTTTCAAAGCCAGGTAAGCTGTGTGATACTTATTTTAGTGTTGTACTGCTCTATAATTATATCCTTAAGGCAACATTATCATGTAGCTAGCCAAGTATATTCTTCATGGGAGAACAAAGATCAAGTTTTCAAACTCCCCCATACATACATTGTTCATGAAGGAAGGCAAGTTGTCATGATTCAAGGAAGCCACGGGTGTGCCTGTAGCCCCATatatttctctcacacacacacagtccattctgaaagtattcagaccccttctccacattttgttactttacagccttattctaaaatgtattaaataaatacaaatcctcaatctacacacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28650 lncRNA downstream 19235 24831392 ~ 24834589 (-) True G24851
TU28703 lncRNA downstream 31696 24821677 ~ 24822128 (-) True G24896
TU28687 lncRNA downstream 57476 24794487 ~ 24796348 (-) True G24882
TU28676 lncRNA downstream 78524 24771916 ~ 24775300 (-) True G24871
TU28642 lncRNA downstream 125042 24728551 ~ 24728782 (-) True G24844
TU28752 lncRNA upstream 31614 24896772 ~ 24896987 (-) True G24940
TU28754 lncRNA upstream 32452 24897610 ~ 24897827 (-) True G24942
TU28788 lncRNA upstream 46291 24911449 ~ 24938701 (-) False LOC118956210
TU28799 lncRNA upstream 53509 24918667 ~ 24962734 (-) True G24972
TU28787 lncRNA upstream 63190 24928348 ~ 24938701 (-) False LOC118956210
XR_002472482.2 mRNA downstream 34581 24808572 ~ 24819243 (-) True cdk10
XM_021595131.2 mRNA downstream 34585 24808572 ~ 24819239 (-) False cdk10
NM_001165109.1 mRNA downstream 142362 24697687 ~ 24711462 (-) True gbrl2
XM_021559670.2 mRNA downstream 242289 24596087 ~ 24611535 (-) True ciapin1
XM_021558348.2 mRNA downstream 242338 24596087 ~ 24611486 (-) False ciapin1
XM_021595703.2 mRNA upstream 33753 24898911 ~ 24905644 (-) True LOC110517792
LOC118956210 mRNA upstream 45826 24910984 ~ 24912695 (-) False LOC118956210
LOC110518671 mRNA upstream 84676 24949834 ~ 24953314 (-) False LOC110518671
XR_005046131.1 mRNA upstream 147023 25012181 ~ 25020388 (-) True LOC118956655
XM_036974229.1 mRNA upstream 179287 25044445 ~ 25083238 (-) True LOC110519016
TU28501 other downstream 300262 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 627334 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 1027333 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 1229475 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 2010519 22839845 ~ 22843305 (-) True G22350
TU28795 other upstream 63190 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 79750 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 415434 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 416446 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2770930 27636088 ~ 27643120 (-) True LOC110520292

Expression Profile